Wall clock time and date at job start Mon Mar 30 2020 02:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47073 * 299.99946 * 3 2 1 6 6 H 1.48494 * 109.47368 * 60.00079 * 3 2 1 7 7 C 1.38950 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00126 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00194 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00128 * 180.02562 * 10 9 7 13 13 C 1.53001 * 119.81383 * 111.01611 * 12 10 9 14 14 C 1.54506 * 122.36836 * 183.39781 * 12 10 9 15 15 H 1.09003 * 122.36429 * 0.02562 * 14 12 10 16 16 C 1.54483 * 104.06360 * 136.78058 * 14 12 10 17 17 O 1.44426 * 104.80284 * 23.97771 * 16 14 12 18 18 C 1.44422 * 105.27439 * 319.49047 * 17 16 14 19 19 H 0.97001 * 120.00072 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00106 * 359.97438 * 9 7 2 21 21 H 1.08992 * 117.43652 * 221.00834 * 13 12 10 22 22 H 1.09001 * 117.42748 * 5.65768 * 13 12 10 23 23 H 1.09005 * 110.37187 * 265.15056 * 16 14 12 24 24 H 1.08996 * 110.37438 * 142.81382 * 16 14 12 25 25 H 1.09008 * 110.37162 * 159.34384 * 18 17 16 26 26 H 1.08998 * 110.37176 * 281.67544 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 6 1.2764 -5.7595 -1.2405 14 6 1.9585 -6.2306 0.0762 15 1 3.0433 -6.3197 0.1354 16 6 1.1125 -7.0397 1.0842 17 8 -0.1955 -6.4287 1.0424 18 6 0.0507 -5.0075 0.9693 19 1 -0.4850 0.8400 -0.0004 20 1 0.3535 -2.3907 0.0002 21 1 0.3445 -6.2410 -1.5366 22 1 1.9306 -5.4605 -2.0595 23 1 1.5365 -6.9604 2.0853 24 1 1.0534 -8.0841 0.7779 25 1 -0.8242 -4.4907 0.5747 26 1 0.3118 -4.6166 1.9527 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575520240.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:02 Heat of formation + Delta-G solvation = -74.110140 kcal Electronic energy + Delta-G solvation = -12432.795679 eV Core-core repulsion = 10090.566438 eV Total energy + Delta-G solvation = -2342.229242 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.61556 -39.46413 -36.15988 -35.13879 -33.34825 -29.91772 -27.35342 -26.63821 -23.73738 -21.71892 -20.48325 -19.80002 -18.33020 -17.01022 -16.81840 -16.27151 -15.92824 -15.80217 -15.24442 -14.75333 -13.77948 -13.75176 -13.58135 -13.02109 -12.90224 -12.50500 -12.42233 -12.14196 -11.64095 -11.45206 -11.15450 -10.57361 -10.40409 -10.10549 -8.53064 -6.03377 1.32523 1.40423 1.54936 1.80931 2.25122 2.48366 2.77160 3.11118 3.17131 3.53257 3.62231 3.96206 4.03916 4.33128 4.46068 4.65720 4.68355 4.74109 4.81201 4.85727 5.12175 5.35418 5.64964 5.92167 6.49218 7.03050 7.45587 7.99491 8.64418 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.067335 B = 0.009215 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.733809 B = 3037.717299 C = 3257.776529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.342 4.342 8 H 0.080 0.920 9 N -0.558 5.558 10 C 0.479 3.521 11 O -0.637 6.637 12 C -0.217 4.217 13 C -0.096 4.096 14 C -0.164 4.164 15 H 0.123 0.877 16 C 0.074 3.926 17 O -0.377 6.377 18 C 0.092 3.908 19 H 0.281 0.719 20 H 0.397 0.603 21 H 0.126 0.874 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.106 0.894 26 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -9.284 0.489 9.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.098 0.902 9 N -0.192 5.192 10 C 0.266 3.734 11 O -0.525 6.525 12 C -0.221 4.221 13 C -0.133 4.133 14 C -0.182 4.182 15 H 0.141 0.859 16 C -0.002 4.002 17 O -0.295 6.295 18 C 0.015 3.985 19 H 0.090 0.910 20 H 0.232 0.768 21 H 0.144 0.856 22 H 0.117 0.883 23 H 0.095 0.905 24 H 0.147 0.853 25 H 0.124 0.876 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.478 -9.206 0.521 9.339 hybrid contribution 0.279 1.230 0.020 1.261 sum -1.199 -7.977 0.541 8.085 Atomic orbital electron populations 1.69679 1.06938 1.29609 1.49353 1.26112 0.96572 1.02552 0.95686 0.84817 0.77972 0.76670 0.78531 1.19751 1.19356 1.19324 1.19769 0.92808 0.83882 1.50661 0.90184 1.41870 1.09376 1.04474 1.63522 1.19308 0.86957 0.84550 0.82546 1.90471 1.15753 1.87920 1.58382 1.23044 1.01851 0.91283 1.05884 1.23305 1.02862 0.97592 0.89560 1.24652 1.00356 0.93639 0.99592 0.85925 1.23147 0.81321 0.98448 0.97255 1.89105 1.27436 1.17830 1.95147 1.22718 0.96153 0.82983 0.96686 0.90976 0.76848 0.85609 0.88316 0.90450 0.85259 0.87636 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.06 15 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 15 3 Si 1.00 42.67 29.55 68.60 2.03 44.69 15 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 7 C -0.34 -19.69 9.68 84.04 0.81 -18.87 15 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 15 9 N -0.56 -29.53 5.24 -307.00 -1.61 -31.14 15 10 C 0.48 23.97 7.46 87.66 0.65 24.62 15 11 O -0.64 -36.73 16.42 -3.05 -0.05 -36.78 15 12 C -0.22 -8.14 2.81 -51.91 -0.15 -8.28 15 13 C -0.10 -2.94 9.83 31.49 0.31 -2.63 15 14 C -0.16 -5.00 7.04 -8.88 -0.06 -5.06 15 15 H 0.12 3.91 8.14 -2.39 -0.02 3.89 15 16 C 0.07 1.82 7.54 72.49 0.55 2.37 15 17 O -0.38 -11.04 11.34 -148.98 -1.69 -12.73 15 18 C 0.09 3.01 6.97 72.49 0.51 3.51 15 19 H 0.28 14.01 8.31 -92.71 -0.77 13.24 15 20 H 0.40 20.03 7.66 -92.71 -0.71 19.31 15 21 H 0.13 3.22 8.09 -2.39 -0.02 3.20 15 22 H 0.10 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.08 1.78 8.14 -2.38 -0.02 1.76 15 24 H 0.13 2.31 8.14 -2.39 -0.02 2.29 15 25 H 0.11 3.27 8.14 -2.38 -0.02 3.25 15 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 Total: -1.00 -66.35 233.84 2.53 -63.82 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.48 Total: 25.53 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 3.09 Total: -4.34 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.33 Total: -80.20 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.74 Total: -49.50 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -66.35 2.53 -63.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575520240.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.290 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds