Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48501 * 109.47082 * 95.01113 * 3 2 1 5 5 H 1.48500 * 109.46666 * 215.00884 * 3 2 1 6 6 H 1.48494 * 109.46927 * 335.00793 * 3 2 1 7 7 C 1.39905 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00287 * 163.58710 * 7 2 1 9 9 C 1.41057 * 119.99918 * 343.59944 * 7 2 1 10 10 C 1.40815 * 120.26866 * 333.69616 * 9 7 2 11 11 C 1.37565 * 119.90275 * 179.77059 * 10 9 7 12 12 F 1.35099 * 119.77372 * 180.25748 * 11 10 9 13 13 C 1.39151 * 120.45849 * 0.53549 * 11 10 9 14 14 C 1.38453 * 120.55113 * 359.69924 * 13 11 10 15 15 O 1.36017 * 119.96259 * 180.02562 * 14 13 11 16 16 C 1.39192 * 120.08217 * 0.03912 * 14 13 11 17 17 N 1.39047 * 120.22701 * 179.97438 * 16 14 13 18 18 H 0.96999 * 120.00476 * 0.02562 * 1 2 3 19 19 H 1.07997 * 120.05368 * 0.02562 * 10 9 7 20 20 H 1.07999 * 119.72455 * 179.71812 * 13 11 10 21 21 H 0.96700 * 113.99593 * 270.02247 * 15 14 13 22 22 H 0.97007 * 119.99345 * 180.02562 * 17 16 14 23 23 H 0.96994 * 120.00336 * 0.02730 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.5963 1.9853 1.3947 5 1 3.4834 1.4730 -0.8032 6 1 1.3914 2.6808 -0.5915 7 6 2.0084 -1.2116 0.0005 8 1 3.0554 -1.2308 -0.2637 9 6 1.3462 -2.4082 0.3460 10 6 0.2197 -2.3777 1.1905 11 6 -0.4232 -3.5487 1.5187 12 9 -1.5068 -3.5159 2.3249 13 6 0.0382 -4.7674 1.0308 14 6 1.1468 -4.8199 0.2031 15 8 1.5873 -6.0177 -0.2674 16 6 1.8115 -3.6484 -0.1479 17 7 2.9255 -3.6976 -0.9785 18 1 -0.4851 0.8400 -0.0004 19 1 -0.1414 -1.4360 1.5766 20 1 -0.4729 -5.6800 1.2997 21 1 2.2378 -6.4492 0.3033 22 1 3.3864 -2.8791 -1.2207 23 1 3.2418 -4.5503 -1.3158 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717861.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = -98.951866 kcal Electronic energy + Delta-G solvation = -12131.330049 eV Core-core repulsion = 9664.563285 eV Total energy + Delta-G solvation = -2466.766765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.45045 -40.19664 -37.48486 -35.10862 -34.67104 -31.00975 -28.63844 -27.13903 -23.29980 -22.34756 -19.92407 -18.27416 -18.03808 -17.50354 -17.04227 -16.46928 -16.14909 -15.74755 -15.16710 -14.63583 -14.26282 -13.69176 -13.46904 -12.98537 -12.79445 -12.24265 -12.11677 -11.84608 -11.31308 -11.03226 -10.87215 -9.38146 -8.67846 -8.10244 -6.22720 0.75436 0.93520 1.42117 1.50726 1.54956 2.21634 2.63170 3.43295 3.49222 3.59390 4.09454 4.46513 4.74624 5.01869 5.24527 5.38971 5.53073 5.78147 5.80463 6.11779 6.47537 6.73235 6.82008 6.92003 7.25805 7.43683 8.35092 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.013876 C = 0.010431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.084005 B = 2017.337865 C = 2683.702221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.032 3.968 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.251 1.251 6 H -0.275 1.275 7 C -0.481 4.481 8 H 0.092 0.908 9 C 0.065 3.935 10 C -0.207 4.207 11 C 0.057 3.943 12 F -0.169 7.169 13 C -0.251 4.251 14 C 0.052 3.948 15 O -0.497 6.497 16 C 0.095 3.905 17 N -0.861 5.861 18 H 0.287 0.713 19 H 0.110 0.890 20 H 0.124 0.876 21 H 0.390 0.610 22 H 0.398 0.602 23 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -2.344 -0.081 6.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.174 1.174 6 H -0.200 1.200 7 C -0.510 4.510 8 H 0.110 0.890 9 C 0.060 3.940 10 C -0.229 4.229 11 C 0.037 3.963 12 F -0.148 7.148 13 C -0.272 4.272 14 C 0.002 3.998 15 O -0.307 6.307 16 C -0.010 4.010 17 N -0.404 5.404 18 H 0.098 0.902 19 H 0.128 0.872 20 H 0.142 0.858 21 H 0.246 0.754 22 H 0.227 0.773 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.924 -2.075 -0.513 5.368 hybrid contribution 0.233 0.569 0.414 0.741 sum 5.157 -1.506 -0.099 5.373 Atomic orbital electron populations 1.69914 1.09266 1.30618 1.35725 1.26786 0.95399 1.04720 0.91411 0.85138 0.78997 0.75632 0.79490 1.19047 1.17414 1.20007 1.19499 0.97983 0.91285 1.42280 0.89003 1.17209 0.92959 0.91844 0.91994 1.20953 1.01874 0.95703 1.04413 1.17441 0.87143 0.95112 0.96637 1.91300 1.53790 1.97598 1.72131 1.20472 1.03108 0.95834 1.07746 1.17188 0.96888 0.83779 1.01934 1.84773 1.63402 1.31909 1.50622 1.18350 0.92539 0.92896 0.97170 1.41684 1.31675 1.11059 1.55975 0.90205 0.87214 0.85827 0.75409 0.77292 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.30 10.99 21.82 0.24 -43.06 14 2 C 0.03 1.53 5.15 85.24 0.44 1.97 14 3 Si 0.99 36.60 29.59 68.60 2.03 38.63 14 4 H -0.27 -9.72 7.11 99.48 0.71 -9.01 14 5 H -0.25 -8.71 7.11 99.48 0.71 -8.00 14 6 H -0.28 -9.97 7.11 99.48 0.71 -9.27 14 7 C -0.48 -24.01 8.49 23.37 0.20 -23.81 14 8 H 0.09 4.17 6.70 -2.91 -0.02 4.15 14 9 C 0.07 3.39 5.57 -21.19 -0.12 3.27 14 10 C -0.21 -11.25 8.64 22.74 0.20 -11.05 14 11 C 0.06 2.92 7.28 22.33 0.16 3.08 14 12 F -0.17 -8.33 17.26 44.97 0.78 -7.55 14 13 C -0.25 -11.54 9.95 22.54 0.22 -11.32 14 14 C 0.05 2.28 6.71 22.55 0.15 2.43 14 15 O -0.50 -17.55 12.73 -93.74 -1.19 -18.74 14 16 C 0.09 4.34 6.80 39.00 0.27 4.61 14 17 N -0.86 -31.82 8.98 -50.04 -0.45 -32.27 14 18 H 0.29 13.70 8.30 -92.71 -0.77 12.93 14 19 H 0.11 6.29 6.24 -2.91 -0.02 6.27 14 20 H 0.12 5.13 8.06 -2.91 -0.02 5.10 14 21 H 0.39 9.64 9.06 -74.06 -0.67 8.97 14 22 H 0.40 14.15 7.06 -92.70 -0.65 13.49 14 23 H 0.40 12.32 8.17 -92.71 -0.76 11.56 14 Total: -1.00 -59.75 213.04 2.13 -57.62 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.79 Total: 36.20 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 1.52 Total: -30.82 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -0.21 Total: -75.33 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.19 Total: -18.74 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.78 Total: -7.55 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -59.75 2.13 -57.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717861.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.333 kcal (2) G-P(sol) polarization free energy of solvation -59.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds