Wall clock time and date at job start Mon Mar 30 2020 01:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30958 * 1 3 3 Si 1.86801 * 119.99661 * 2 1 4 4 H 1.48502 * 109.47035 * 274.50606 * 3 2 1 5 5 H 1.48502 * 109.47488 * 34.50656 * 3 2 1 6 6 H 1.48499 * 109.47303 * 154.50756 * 3 2 1 7 7 C 1.39834 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99893 * 162.02588 * 7 2 1 9 9 C 1.40940 * 119.99605 * 341.75330 * 7 2 1 10 10 C 1.40873 * 120.19305 * 334.84116 * 9 7 2 11 11 C 1.36341 * 119.99287 * 180.02562 * 10 9 7 12 12 F 1.35102 * 119.80598 * 180.02562 * 11 10 9 13 13 C 1.39957 * 120.38888 * 359.97438 * 11 10 9 14 14 N 1.39008 * 119.80071 * 179.97438 * 13 11 10 15 15 C 1.39151 * 120.38565 * 0.02562 * 13 11 10 16 16 C 1.38070 * 120.00345 * 359.72074 * 15 13 11 17 17 O 1.35689 * 120.19909 * 180.29921 * 16 15 13 18 18 H 0.96998 * 120.00576 * 0.02562 * 1 2 3 19 19 H 1.08001 * 120.00541 * 359.97438 * 10 9 7 20 20 H 0.96993 * 120.00506 * 0.02562 * 14 13 11 21 21 H 0.97009 * 119.99554 * 179.97438 * 14 13 11 22 22 H 1.08006 * 119.99622 * 179.97438 * 15 13 11 23 23 H 0.96695 * 114.00192 * 270.25788 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 2.3957 2.1015 -1.3958 5 1 1.4918 2.6234 0.7931 6 1 3.5855 1.4147 0.6026 7 6 2.0089 -1.2109 0.0005 8 1 3.0493 -1.2338 -0.2881 9 6 1.3573 -2.4007 0.3833 10 6 0.2397 -2.3525 1.2395 11 6 -0.3871 -3.5059 1.6075 12 9 -1.4589 -3.4553 2.4284 13 6 0.0726 -4.7421 1.1391 14 7 -0.5755 -5.9106 1.5226 15 6 1.1750 -4.8082 0.2927 16 6 1.8188 -3.6498 -0.0944 17 8 2.8905 -3.7092 -0.9245 18 1 -0.4851 0.8400 -0.0004 19 1 -0.1200 -1.4020 1.6050 20 1 -1.3440 -5.8677 2.1127 21 1 -0.2595 -6.7689 1.1992 22 1 1.5247 -5.7656 -0.0647 23 1 3.7380 -3.7956 -0.4671 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718272.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:52 Heat of formation + Delta-G solvation = -75.352769 kcal Electronic energy + Delta-G solvation = -12123.622294 eV Core-core repulsion = 9657.878863 eV Total energy + Delta-G solvation = -2465.743431 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.64803 -38.17073 -35.55031 -34.31138 -32.13725 -28.60245 -28.08873 -24.47250 -21.57586 -20.62898 -17.63985 -17.15454 -16.29384 -15.72293 -15.08058 -14.51565 -14.38621 -13.96550 -13.31026 -12.73843 -12.55953 -12.05515 -11.45577 -11.25802 -11.15704 -10.57708 -10.52061 -10.09410 -9.52291 -9.14598 -8.76760 -7.38478 -6.83056 -6.56881 -4.20064 2.57676 2.76506 3.09129 3.12391 3.19198 3.94973 4.51590 4.81362 5.35105 5.58021 5.72170 6.21968 6.65968 6.83499 7.13092 7.24776 7.37166 7.44973 7.75342 8.07846 8.32911 8.52189 8.62650 8.71239 8.83248 9.11287 10.20189 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.043077 B = 0.013072 C = 0.010327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.840713 B = 2141.445804 C = 2710.736728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.446 4.446 8 H 0.082 0.918 9 C 0.077 3.923 10 C -0.151 4.151 11 C 0.039 3.961 12 F -0.168 7.168 13 C 0.076 3.924 14 N -0.892 5.892 15 C -0.162 4.162 16 C 0.009 3.991 17 O -0.489 6.489 18 H 0.281 0.719 19 H 0.133 0.867 20 H 0.387 0.613 21 H 0.386 0.614 22 H 0.104 0.896 23 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -3.557 2.381 4.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.073 3.927 10 C -0.171 4.171 11 C 0.017 3.983 12 F -0.147 7.147 13 C -0.024 4.024 14 N -0.436 5.436 15 C -0.185 4.185 16 C -0.037 4.037 17 O -0.296 6.296 18 H 0.092 0.908 19 H 0.151 0.849 20 H 0.213 0.787 21 H 0.212 0.788 22 H 0.122 0.878 23 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.016 -3.235 1.916 3.895 hybrid contribution 0.260 0.400 0.520 0.705 sum 1.276 -2.836 2.435 3.950 Atomic orbital electron populations 1.69864 1.07562 1.29307 1.35524 1.25911 0.94732 1.01372 0.92446 0.86281 0.80634 0.80645 0.79052 1.19571 1.20115 1.18450 1.19239 0.98404 0.90811 1.39090 0.90005 1.17555 0.92366 0.92261 0.90527 1.20800 0.99198 0.95994 1.01155 1.17008 0.89139 0.93643 0.98537 1.91290 1.54607 1.97364 1.71428 1.16998 0.97401 0.85274 1.02769 1.41659 1.37459 1.05129 1.59378 1.20158 0.98673 0.97337 1.02364 1.18336 0.93906 0.91707 0.99764 1.84796 1.15149 1.95905 1.33734 0.90809 0.84890 0.78657 0.78805 0.87804 0.79247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.93 11.02 55.54 0.61 -20.32 14 2 C 0.07 1.83 5.12 -17.33 -0.09 1.75 14 3 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 14 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 14 7 C -0.45 -11.81 8.69 -37.96 -0.33 -12.14 14 8 H 0.08 2.08 7.66 -52.49 -0.40 1.68 14 9 C 0.08 2.05 5.58 -106.65 -0.59 1.46 14 10 C -0.15 -3.98 8.58 -39.27 -0.34 -4.32 14 11 C 0.04 0.96 7.26 -39.62 -0.29 0.67 14 12 F -0.17 -3.90 16.59 2.25 0.04 -3.87 14 13 C 0.08 1.69 6.77 -83.62 -0.57 1.12 14 14 N -0.89 -15.82 9.05 32.53 0.29 -15.53 14 15 C -0.16 -3.64 9.80 -39.30 -0.39 -4.02 14 16 C 0.01 0.22 6.73 -38.41 -0.26 -0.03 14 17 O -0.49 -10.95 12.79 -18.77 -0.24 -11.19 14 18 H 0.28 6.71 8.30 -40.82 -0.34 6.37 14 19 H 0.13 3.64 6.21 -52.49 -0.33 3.31 14 20 H 0.39 6.38 8.28 -40.82 -0.34 6.04 14 21 H 0.39 5.73 8.83 -40.82 -0.36 5.37 14 22 H 0.10 2.05 8.06 -52.48 -0.42 1.63 14 23 H 0.36 6.17 9.06 45.56 0.41 6.58 14 LS Contribution 215.29 15.07 3.24 3.24 Total: -1.00 -29.13 215.29 -4.50 -33.63 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.57 Total: 15.81 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.85 Total: -15.51 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.91 Total: -35.84 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.24 Total: -11.19 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -29.13 -4.50 -33.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718272.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.718 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds