Wall clock time and date at job start Mon Mar 30 2020 01:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30958 * 1 3 3 Si 1.86801 * 119.99661 * 2 1 4 4 H 1.48502 * 109.47035 * 274.50606 * 3 2 1 5 5 H 1.48502 * 109.47488 * 34.50656 * 3 2 1 6 6 H 1.48499 * 109.47303 * 154.50756 * 3 2 1 7 7 C 1.39834 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99893 * 162.02588 * 7 2 1 9 9 C 1.40940 * 119.99605 * 341.75330 * 7 2 1 10 10 C 1.40873 * 120.19305 * 334.84116 * 9 7 2 11 11 C 1.36341 * 119.99287 * 180.02562 * 10 9 7 12 12 F 1.35102 * 119.80598 * 180.02562 * 11 10 9 13 13 C 1.39957 * 120.38888 * 359.97438 * 11 10 9 14 14 N 1.39008 * 119.80071 * 179.97438 * 13 11 10 15 15 C 1.39151 * 120.38565 * 0.02562 * 13 11 10 16 16 C 1.38070 * 120.00345 * 359.72074 * 15 13 11 17 17 O 1.35689 * 120.19909 * 180.29921 * 16 15 13 18 18 H 0.96998 * 120.00576 * 0.02562 * 1 2 3 19 19 H 1.08001 * 120.00541 * 359.97438 * 10 9 7 20 20 H 0.96993 * 120.00506 * 0.02562 * 14 13 11 21 21 H 0.97009 * 119.99554 * 179.97438 * 14 13 11 22 22 H 1.08006 * 119.99622 * 179.97438 * 15 13 11 23 23 H 0.96695 * 114.00192 * 270.25788 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 2.3957 2.1015 -1.3958 5 1 1.4918 2.6234 0.7931 6 1 3.5855 1.4147 0.6026 7 6 2.0089 -1.2109 0.0005 8 1 3.0493 -1.2338 -0.2881 9 6 1.3573 -2.4007 0.3833 10 6 0.2397 -2.3525 1.2395 11 6 -0.3871 -3.5059 1.6075 12 9 -1.4589 -3.4553 2.4284 13 6 0.0726 -4.7421 1.1391 14 7 -0.5755 -5.9106 1.5226 15 6 1.1750 -4.8082 0.2927 16 6 1.8188 -3.6498 -0.0944 17 8 2.8905 -3.7092 -0.9245 18 1 -0.4851 0.8400 -0.0004 19 1 -0.1200 -1.4020 1.6050 20 1 -1.3440 -5.8677 2.1127 21 1 -0.2595 -6.7689 1.1992 22 1 1.5247 -5.7656 -0.0647 23 1 3.7380 -3.7956 -0.4671 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718272.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:52 Heat of formation + Delta-G solvation = -97.013449 kcal Electronic energy + Delta-G solvation = -12124.561572 eV Core-core repulsion = 9657.878863 eV Total energy + Delta-G solvation = -2466.682709 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.51481 -40.00733 -37.31817 -36.13308 -33.91638 -30.40979 -29.97257 -26.33111 -23.44601 -22.47263 -19.51758 -18.93129 -18.02485 -17.59188 -16.80216 -16.30199 -16.21883 -15.69241 -15.09793 -14.50255 -14.41794 -13.88699 -13.27411 -13.00045 -12.83293 -12.35949 -12.27735 -11.91263 -11.33139 -10.96440 -10.59060 -9.24625 -8.67684 -8.36493 -6.12302 0.69090 0.94435 1.40925 1.50270 1.56696 2.23970 2.65802 3.25393 3.48524 3.73847 3.95024 4.39724 4.86968 4.97674 5.25324 5.44597 5.52615 5.57791 5.87809 6.18660 6.45789 6.76238 6.91103 6.92371 7.24099 7.38163 8.37656 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.043077 B = 0.013072 C = 0.010327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.840713 B = 2141.445804 C = 2710.736728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.480 4.480 8 H 0.082 0.918 9 C 0.041 3.959 10 C -0.171 4.171 11 C 0.018 3.982 12 F -0.165 7.165 13 C 0.095 3.905 14 N -0.874 5.874 15 C -0.166 4.166 16 C 0.012 3.988 17 O -0.497 6.497 18 H 0.286 0.714 19 H 0.112 0.888 20 H 0.396 0.604 21 H 0.404 0.596 22 H 0.138 0.862 23 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 -4.555 2.305 5.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.510 4.510 8 H 0.100 0.900 9 C 0.037 3.963 10 C -0.192 4.192 11 C -0.005 4.005 12 F -0.144 7.144 13 C -0.007 4.007 14 N -0.419 5.419 15 C -0.189 4.189 16 C -0.034 4.034 17 O -0.307 6.307 18 H 0.097 0.903 19 H 0.130 0.870 20 H 0.224 0.776 21 H 0.234 0.766 22 H 0.155 0.845 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.661 -4.293 1.853 4.962 hybrid contribution 0.047 0.511 0.545 0.748 sum 1.708 -3.782 2.397 4.793 Atomic orbital electron populations 1.69931 1.09100 1.30438 1.36845 1.26776 0.95441 1.04674 0.91525 0.85181 0.79273 0.75980 0.79191 1.19015 1.19410 1.17817 1.19474 0.98676 0.91925 1.40972 0.89953 1.17889 0.93241 0.93578 0.91614 1.20692 1.00277 0.95964 1.02276 1.17119 0.89675 0.94210 0.99516 1.91284 1.54378 1.97406 1.71318 1.17090 0.96708 0.85821 1.01121 1.41595 1.37050 1.04568 1.58699 1.20420 0.98300 0.98086 1.02071 1.18527 0.94369 0.91746 0.98784 1.84692 1.16030 1.95852 1.34080 0.90317 0.87026 0.77605 0.76608 0.84452 0.76350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.19 11.02 21.81 0.24 -44.95 14 2 C 0.03 1.49 5.12 85.21 0.44 1.93 14 3 Si 0.98 38.81 29.60 68.60 2.03 40.84 14 4 H -0.27 -10.16 7.11 99.48 0.71 -9.45 14 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 14 6 H -0.25 -9.67 7.11 99.48 0.71 -8.97 14 7 C -0.48 -25.92 8.69 23.32 0.20 -25.72 14 8 H 0.08 4.24 7.66 -2.91 -0.02 4.22 14 9 C 0.04 2.20 5.58 -21.18 -0.12 2.08 14 10 C -0.17 -9.26 8.58 22.47 0.19 -9.06 14 11 C 0.02 0.87 7.26 22.24 0.16 1.03 14 12 F -0.16 -7.60 16.59 44.97 0.75 -6.86 14 13 C 0.10 4.03 6.77 38.64 0.26 4.29 14 14 N -0.87 -28.02 9.05 -50.99 -0.46 -28.48 14 15 C -0.17 -7.00 9.80 22.45 0.22 -6.78 14 16 C 0.01 0.58 6.73 23.03 0.16 0.73 14 17 O -0.50 -21.42 12.79 -90.08 -1.15 -22.57 14 18 H 0.29 14.06 8.30 -92.71 -0.77 13.29 14 19 H 0.11 6.40 6.21 -2.91 -0.02 6.38 14 20 H 0.40 11.80 8.28 -92.71 -0.77 11.03 14 21 H 0.40 10.28 8.83 -92.70 -0.82 9.47 14 22 H 0.14 4.84 8.06 -2.91 -0.02 4.82 14 23 H 0.38 12.43 9.06 -74.06 -0.67 11.76 14 Total: -1.00 -62.41 215.29 1.95 -60.47 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.97 Total: 33.04 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 1.51 Total: -31.50 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -0.22 Total: -73.43 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -1.15 Total: -22.57 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.75 Total: -6.86 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -62.41 1.95 -60.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718272.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.544 kcal (2) G-P(sol) polarization free energy of solvation -62.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds