Wall clock time and date at job start Mon Mar 30 2020 01:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86799 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46584 * 239.99785 * 3 2 1 5 5 H 1.48500 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47050 * 119.99727 * 3 2 1 7 7 C 1.39911 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00130 * 200.54264 * 7 2 1 9 9 C 1.41115 * 119.99994 * 20.82900 * 7 2 1 10 10 C 1.41137 * 120.26791 * 215.68826 * 9 7 2 11 11 O 1.35789 * 120.21091 * 359.97438 * 10 9 7 12 12 C 1.38864 * 119.57550 * 179.69302 * 10 9 7 13 13 N 1.40158 * 119.94160 * 180.31179 * 12 10 9 14 14 C 1.38901 * 120.12168 * 0.57698 * 12 10 9 15 15 C 1.38680 * 120.54975 * 359.71625 * 14 12 10 16 16 C 1.37760 * 120.42530 * 359.97438 * 15 14 12 17 17 F 1.35108 * 120.06947 * 180.02562 * 16 15 14 18 18 H 0.96993 * 120.00221 * 0.02562 * 1 2 3 19 19 H 0.96705 * 114.00303 * 90.00017 * 11 10 9 20 20 H 0.97000 * 120.00290 * 180.25637 * 13 12 10 21 21 H 0.96998 * 119.99690 * 0.27011 * 13 12 10 22 22 H 1.08002 * 119.72816 * 179.68905 * 14 12 10 23 23 H 1.08005 * 119.78805 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0085 -1.2117 0.0005 8 1 3.0369 -1.2413 0.3287 9 6 1.3721 -2.3940 -0.4335 10 6 1.6616 -3.6273 0.1887 11 8 2.5555 -3.6845 1.2093 12 6 1.0222 -4.7809 -0.2457 13 7 1.2991 -6.0087 0.3710 14 6 0.1128 -4.7212 -1.2939 15 6 -0.1710 -3.5132 -1.9130 16 6 0.4455 -2.3539 -1.4961 17 9 0.1633 -1.1808 -2.1041 18 1 -0.4850 0.8400 -0.0004 19 1 2.1620 -3.5621 2.0841 20 1 0.8558 -6.8157 0.0658 21 1 1.9340 -6.0514 1.1031 22 1 -0.3771 -5.6232 -1.6300 23 1 -0.8798 -3.4810 -2.7272 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718551.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:22 Heat of formation + Delta-G solvation = -71.057336 kcal Electronic energy + Delta-G solvation = -12351.722250 eV Core-core repulsion = 9886.165083 eV Total energy + Delta-G solvation = -2465.557167 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.80219 -38.19601 -34.98613 -34.08173 -32.54549 -29.34590 -26.61884 -25.11491 -21.15344 -20.68411 -17.50388 -17.06801 -16.23996 -15.34428 -14.95015 -14.73915 -13.94420 -13.62934 -13.20435 -12.75551 -12.18447 -11.55842 -11.50628 -11.32396 -11.07957 -10.94118 -10.50531 -9.63497 -9.48576 -9.10959 -8.74102 -7.39856 -6.80339 -6.22893 -4.41176 2.64417 2.91255 3.11101 3.14110 3.22939 3.98132 4.58231 4.79686 5.27161 5.70380 6.08606 6.35953 6.54672 6.86078 7.13676 7.19607 7.40650 7.59475 7.79048 7.97233 8.37033 8.43978 8.63447 8.70501 8.82152 9.17028 10.18977 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.047121 B = 0.014415 C = 0.011622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.068977 B = 1941.963978 C = 2408.594043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.456 4.456 8 H 0.088 0.912 9 C 0.102 3.898 10 C -0.067 4.067 11 O -0.485 6.485 12 C 0.205 3.795 13 N -0.888 5.888 14 C -0.275 4.275 15 C -0.103 4.103 16 C 0.007 3.993 17 F -0.147 7.147 18 H 0.284 0.716 19 H 0.349 0.651 20 H 0.385 0.615 21 H 0.391 0.609 22 H 0.099 0.901 23 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -3.710 0.948 3.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.484 4.484 8 H 0.106 0.894 9 C 0.098 3.902 10 C -0.117 4.117 11 O -0.291 6.291 12 C 0.103 3.897 13 N -0.430 5.430 14 C -0.299 4.299 15 C -0.123 4.123 16 C -0.014 4.014 17 F -0.125 7.125 18 H 0.095 0.905 19 H 0.200 0.800 20 H 0.211 0.789 21 H 0.218 0.782 22 H 0.117 0.883 23 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.493 -3.518 0.440 3.580 hybrid contribution -0.163 0.700 0.477 0.863 sum 0.330 -2.818 0.917 2.982 Atomic orbital electron populations 1.69796 1.07823 1.30007 1.32006 1.25868 0.94628 1.01334 0.92377 0.86309 0.80135 0.80042 0.79953 1.18731 1.20374 1.19042 1.19284 0.99561 0.90881 1.38682 0.89396 1.17591 0.90095 0.92579 0.89984 1.17570 1.05180 0.91281 0.97716 1.84829 1.34341 1.94327 1.15556 1.17824 0.93507 0.85354 0.92968 1.42271 1.52216 1.06614 1.41900 1.19460 1.09139 0.96810 1.04482 1.20356 0.99869 0.91950 1.00126 1.17490 1.05761 0.80372 0.97807 1.91307 1.92827 1.46741 1.81667 0.90530 0.79991 0.78913 0.78212 0.88272 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.86 11.13 55.55 0.62 -20.24 14 2 C 0.08 2.06 4.48 -17.32 -0.08 1.98 14 3 Si 0.91 19.59 29.61 -169.99 -5.03 14.55 14 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 14 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 14 7 C -0.46 -12.53 8.49 -37.87 -0.32 -12.85 14 8 H 0.09 2.38 7.87 -52.49 -0.41 1.96 14 9 C 0.10 2.80 5.41 -106.64 -0.58 2.22 14 10 C -0.07 -1.68 6.75 -38.25 -0.26 -1.94 14 11 O -0.48 -10.91 12.15 -19.08 -0.23 -11.14 14 12 C 0.21 4.57 6.76 -83.57 -0.57 4.01 14 13 N -0.89 -15.37 9.10 32.50 0.30 -15.07 14 14 C -0.28 -6.08 9.88 -39.17 -0.39 -6.47 14 15 C -0.10 -2.45 9.99 -39.59 -0.40 -2.85 14 16 C 0.01 0.20 6.69 -38.69 -0.26 -0.06 14 17 F -0.15 -4.09 14.23 2.25 0.03 -4.05 14 18 H 0.28 7.02 8.30 -40.82 -0.34 6.69 14 19 H 0.35 6.61 9.06 45.56 0.41 7.02 14 20 H 0.38 5.55 8.84 -40.82 -0.36 5.19 14 21 H 0.39 6.24 8.18 -40.82 -0.33 5.90 14 22 H 0.10 1.89 8.06 -52.49 -0.42 1.47 14 23 H 0.10 2.17 8.06 -52.48 -0.42 1.74 14 LS Contribution 214.36 15.07 3.23 3.23 Total: -1.00 -29.90 214.36 -4.60 -34.51 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.67 Total: 14.18 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.84 Total: -15.96 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.91 Total: -35.31 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.23 Total: -11.14 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.03 Total: -4.05 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.90 -4.60 -34.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718551.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.550 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds