Wall clock time and date at job start Mon Mar 30 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86795 * 119.99934 * 2 1 4 4 H 1.48505 * 109.46985 * 270.00105 * 3 2 1 5 5 H 1.48501 * 109.47083 * 30.00005 * 3 2 1 6 6 H 1.48492 * 109.47370 * 150.00069 * 3 2 1 7 7 C 1.39859 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00393 * 197.96202 * 7 2 1 9 9 C 1.41197 * 119.99713 * 17.96203 * 7 2 1 10 10 C 1.40780 * 120.13949 * 24.62079 * 9 7 2 11 11 C 1.37952 * 119.78853 * 179.97438 * 10 9 7 12 12 N 1.39873 * 119.96610 * 180.02562 * 11 10 9 13 13 C 1.39943 * 120.07662 * 359.97438 * 11 10 9 14 14 O 1.35777 * 119.86079 * 179.97438 * 13 11 10 15 15 C 1.39314 * 120.28102 * 0.27335 * 13 11 10 16 16 F 1.35102 * 119.89473 * 179.72596 * 15 13 11 17 17 C 1.37680 * 120.20932 * 359.48597 * 15 13 11 18 18 H 0.96993 * 120.00444 * 359.97438 * 1 2 3 19 19 H 1.07996 * 120.10763 * 0.02562 * 10 9 7 20 20 H 0.96996 * 119.99773 * 179.97438 * 12 11 10 21 21 H 0.96998 * 119.99028 * 359.97438 * 12 11 10 22 22 H 0.96696 * 114.00331 * 89.99773 * 14 13 11 23 23 H 1.07994 * 120.03637 * 180.27737 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0488 -1.2341 0.2879 9 6 1.3540 -2.4040 -0.3782 10 6 0.2267 -2.3558 -1.2201 11 6 -0.4067 -3.5257 -1.5849 12 7 -1.5267 -3.4822 -2.4217 13 6 0.0706 -4.7562 -1.1197 14 8 -0.5565 -5.9050 -1.4811 15 6 1.1828 -4.8071 -0.2823 16 9 1.6336 -5.9989 0.1667 17 6 1.8269 -3.6471 0.0852 18 1 -0.4850 0.8399 0.0004 19 1 -0.1405 -1.4060 -1.5798 20 1 -1.9722 -4.3045 -2.6788 21 1 -1.8578 -2.6296 -2.7447 22 1 -0.2134 -6.3017 -2.2935 23 1 2.6915 -3.6901 0.7309 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718577.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:25 Heat of formation + Delta-G solvation = -101.545470 kcal Electronic energy + Delta-G solvation = -12076.369539 eV Core-core repulsion = 9609.490308 eV Total energy + Delta-G solvation = -2466.879232 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.62007 -40.00595 -37.53865 -35.57489 -34.50235 -30.66151 -29.14841 -26.86621 -23.13854 -22.60163 -19.57605 -19.07080 -18.21200 -17.28864 -16.84005 -16.59264 -15.91587 -15.70794 -15.55839 -14.75263 -14.20637 -13.57279 -13.37102 -13.01001 -12.79697 -12.49495 -12.20765 -11.76020 -11.38397 -11.16081 -10.70179 -9.20113 -8.74566 -8.18446 -6.44650 0.73355 1.00627 1.42714 1.52734 1.56130 2.21493 2.60163 3.14968 3.51877 3.64730 3.93685 4.66409 4.84531 5.02046 5.19620 5.37428 5.51482 5.69715 5.98889 6.09891 6.43168 6.72866 6.77687 6.86967 7.21834 7.24823 8.26615 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.049817 B = 0.011586 C = 0.009660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.919762 B = 2416.087071 C = 2897.840721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.131 3.869 10 C -0.260 4.260 11 C 0.233 3.767 12 N -0.864 5.864 13 C -0.139 4.139 14 O -0.489 6.489 15 C 0.122 3.878 16 F -0.157 7.157 17 C -0.305 4.305 18 H 0.293 0.707 19 H 0.119 0.881 20 H 0.401 0.599 21 H 0.401 0.599 22 H 0.371 0.629 23 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 0.022 -4.445 4.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.511 4.511 8 H 0.101 0.899 9 C 0.127 3.873 10 C -0.285 4.285 11 C 0.128 3.872 12 N -0.406 5.406 13 C -0.188 4.188 14 O -0.296 6.296 15 C 0.102 3.898 16 F -0.136 7.136 17 C -0.326 4.326 18 H 0.103 0.897 19 H 0.137 0.863 20 H 0.230 0.770 21 H 0.230 0.770 22 H 0.224 0.776 23 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.057 0.202 -3.858 4.005 hybrid contribution 0.363 0.183 -0.363 0.545 sum -0.694 0.385 -4.221 4.295 Atomic orbital electron populations 1.69908 1.09052 1.31043 1.33229 1.26811 0.95517 1.04588 0.90853 0.85117 0.79014 0.75397 0.79702 1.18372 1.19191 1.18231 1.19848 0.98738 0.92059 1.40440 0.89866 1.17460 0.90578 0.91818 0.87419 1.20653 1.03588 0.95626 1.08609 1.17674 0.87995 0.92020 0.89544 1.42085 1.31530 1.11255 1.55736 1.17357 1.02173 0.85288 1.14020 1.84841 1.60429 1.37322 1.47033 1.17799 0.94231 0.79928 0.97873 1.91322 1.88842 1.45441 1.88000 1.20853 1.07255 0.91665 1.12855 0.89660 0.86311 0.76976 0.76983 0.77602 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.87 10.96 21.81 0.24 -39.63 14 2 C 0.04 1.90 5.13 85.22 0.44 2.33 14 3 Si 0.99 35.88 29.60 68.60 2.03 37.91 14 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.27 -9.23 7.11 99.48 0.71 -8.52 14 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14 7 C -0.48 -25.11 9.03 23.39 0.21 -24.90 14 8 H 0.08 4.16 7.91 -2.91 -0.02 4.14 14 9 C 0.13 7.02 5.57 -21.29 -0.12 6.90 14 10 C -0.26 -13.20 8.51 22.82 0.19 -13.00 14 11 C 0.23 10.62 6.76 38.20 0.26 10.88 14 12 N -0.86 -30.44 9.08 -51.19 -0.46 -30.91 14 13 C -0.14 -6.45 6.75 22.94 0.15 -6.29 14 14 O -0.49 -19.41 12.58 -91.05 -1.14 -20.56 14 15 C 0.12 6.02 7.29 22.40 0.16 6.18 14 16 F -0.16 -7.37 17.10 44.97 0.77 -6.60 14 17 C -0.30 -15.74 9.75 22.77 0.22 -15.52 14 18 H 0.29 12.88 8.30 -92.71 -0.77 12.11 14 19 H 0.12 6.11 6.16 -2.91 -0.02 6.09 14 20 H 0.40 12.17 8.18 -92.71 -0.76 11.41 14 21 H 0.40 12.67 8.84 -92.71 -0.82 11.85 14 22 H 0.37 11.14 9.06 -74.06 -0.67 10.47 14 23 H 0.11 5.34 8.06 -2.91 -0.02 5.32 14 Total: -1.00 -59.23 215.94 1.99 -57.24 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.96 Total: 35.96 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 1.52 Total: -33.41 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -0.23 Total: -70.54 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.14 Total: -20.56 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.77 Total: -6.60 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -59.23 1.99 -57.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718577.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.307 kcal (2) G-P(sol) polarization free energy of solvation -59.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds