Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30942 * 1 3 3 Si 1.86801 * 120.00394 * 2 1 4 4 H 1.48494 * 109.47269 * 275.39718 * 3 2 1 5 5 H 1.48504 * 109.46780 * 35.39132 * 3 2 1 6 6 H 1.48495 * 109.47500 * 155.38943 * 3 2 1 7 7 C 1.39857 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00506 * 342.43697 * 7 2 1 9 9 C 1.40949 * 119.99731 * 162.16054 * 7 2 1 10 10 C 1.40837 * 120.23943 * 329.59913 * 9 7 2 11 11 C 1.36282 * 120.03815 * 179.97438 * 10 9 7 12 12 C 1.39522 * 120.52608 * 0.02562 * 11 10 9 13 13 O 1.35749 * 119.76403 * 180.02562 * 12 11 10 14 14 C 1.38942 * 120.47098 * 0.02562 * 12 11 10 15 15 F 1.35099 * 120.02167 * 179.97438 * 14 12 11 16 16 C 1.38583 * 119.95326 * 359.71847 * 14 12 11 17 17 N 1.38987 * 120.26446 * 180.29702 * 16 14 12 18 18 H 0.97003 * 119.99803 * 359.97438 * 1 2 3 19 19 H 1.08003 * 119.98050 * 359.97438 * 10 9 7 20 20 H 1.08004 * 119.74051 * 180.02562 * 11 10 9 21 21 H 0.96696 * 114.00127 * 89.99941 * 13 12 11 22 22 H 0.97000 * 120.00553 * 180.21148 * 17 16 14 23 23 H 0.97006 * 119.99350 * 0.21250 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.3770 2.1122 -1.3938 5 1 1.5026 2.6171 0.8109 6 1 3.5934 1.4099 0.5830 7 6 2.0087 -1.2112 -0.0005 8 1 1.5065 -2.1249 0.2813 9 6 3.3673 -1.2404 -0.3745 10 6 3.8658 -0.3122 -1.3091 11 6 5.1803 -0.3437 -1.6674 12 6 6.0427 -1.2915 -1.1155 13 8 7.3494 -1.3086 -1.4830 14 6 5.5736 -2.2180 -0.1924 15 9 6.4165 -3.1321 0.3359 16 6 4.2417 -2.2003 0.1900 17 7 3.7670 -3.1201 1.1175 18 1 -0.4850 0.8401 0.0004 19 1 3.2059 0.4251 -1.7422 20 1 5.5576 0.3706 -2.3843 21 1 7.9202 -0.7558 -0.9320 22 1 2.8333 -3.1064 1.3802 23 1 4.3694 -3.7759 1.5022 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719137.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = -75.559366 kcal Electronic energy + Delta-G solvation = -12238.576011 eV Core-core repulsion = 9772.823621 eV Total energy + Delta-G solvation = -2465.752390 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.81114 -38.35771 -36.35566 -33.52831 -32.95243 -29.62978 -27.76902 -24.67496 -21.66760 -20.80218 -17.95384 -17.57717 -16.50718 -15.73448 -15.34900 -14.78448 -14.43765 -14.09365 -13.59669 -13.04794 -12.86447 -12.36522 -11.81018 -11.45747 -11.06384 -10.76855 -10.23749 -10.14124 -9.55026 -9.44804 -9.22721 -7.53401 -7.04155 -6.71061 -4.44734 2.25123 2.55757 3.05033 3.15729 3.25805 3.91261 4.27302 4.81452 5.11649 5.34035 5.44847 6.03450 6.21476 6.52090 6.91483 7.01761 7.07811 7.32149 7.59872 7.67231 8.08732 8.25899 8.47184 8.57476 8.73546 8.79273 9.97833 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.044225 B = 0.014651 C = 0.011738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.975140 B = 1910.686823 C = 2384.884313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.441 4.441 8 H 0.091 0.909 9 C 0.062 3.938 10 C -0.213 4.213 11 C -0.112 4.112 12 C -0.026 4.026 13 O -0.494 6.494 14 C 0.016 3.984 15 F -0.159 7.159 16 C 0.115 3.885 17 N -0.874 5.874 18 H 0.286 0.714 19 H 0.110 0.890 20 H 0.106 0.894 21 H 0.360 0.640 22 H 0.401 0.599 23 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 0.952 1.312 5.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.109 0.891 9 C 0.056 3.944 10 C -0.234 4.234 11 C -0.132 4.132 12 C -0.072 4.072 13 O -0.300 6.300 14 C -0.010 4.010 15 F -0.138 7.138 16 C 0.011 3.989 17 N -0.416 5.416 18 H 0.097 0.903 19 H 0.128 0.872 20 H 0.124 0.876 21 H 0.212 0.788 22 H 0.230 0.770 23 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.831 0.660 0.861 4.951 hybrid contribution 0.398 0.680 0.659 1.027 sum 5.229 1.340 1.520 5.607 Atomic orbital electron populations 1.69725 1.07998 1.30395 1.34944 1.26109 0.94754 1.01651 0.90995 0.86279 0.81260 0.79652 0.79003 1.19450 1.21816 1.16719 1.19097 0.92468 0.96025 1.39328 0.89066 1.17269 0.92882 0.91694 0.92555 1.20410 0.95368 1.04683 1.02892 1.20326 0.93915 0.98062 1.00925 1.17634 0.84089 1.01208 1.04262 1.84846 1.16476 1.71026 1.57680 1.17265 0.87096 0.94794 1.01840 1.91283 1.71134 1.65536 1.85893 1.17688 0.89991 0.96314 0.94917 1.41818 1.13298 1.37479 1.48998 0.90318 0.87226 0.87552 0.78791 0.76955 0.78877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.52 13.93 55.54 0.77 -19.74 14 2 C 0.08 2.09 5.40 -17.33 -0.09 2.00 14 3 Si 0.91 19.91 24.52 -169.99 -4.17 15.74 14 4 H -0.27 -5.69 6.71 56.52 0.38 -5.31 14 5 H -0.29 -6.16 7.11 56.52 0.40 -5.75 14 6 H -0.24 -5.47 6.86 56.52 0.39 -5.08 14 7 C -0.44 -11.18 8.89 -37.95 -0.34 -11.52 14 8 H 0.09 2.37 7.05 -52.49 -0.37 2.00 14 9 C 0.06 1.51 5.11 -106.61 -0.54 0.96 14 10 C -0.21 -5.00 7.09 -39.30 -0.28 -5.28 14 11 C -0.11 -2.46 9.90 -39.81 -0.39 -2.86 14 12 C -0.03 -0.57 6.72 -38.84 -0.26 -0.83 14 13 O -0.49 -9.84 13.34 -18.96 -0.25 -10.09 14 14 C 0.02 0.36 7.31 -39.19 -0.29 0.07 14 15 F -0.16 -3.48 16.46 2.25 0.04 -3.44 14 16 C 0.11 2.65 6.79 -83.21 -0.56 2.09 14 17 N -0.87 -17.28 8.99 32.75 0.29 -16.98 14 18 H 0.29 6.62 8.30 -40.82 -0.34 6.28 14 19 H 0.11 2.52 4.77 -52.48 -0.25 2.27 14 20 H 0.11 2.06 8.06 -52.48 -0.42 1.64 14 21 H 0.36 5.41 9.06 45.56 0.41 5.82 14 22 H 0.40 7.65 7.15 -40.82 -0.29 7.36 14 23 H 0.38 6.70 8.31 -40.82 -0.34 6.36 14 LS Contribution 207.82 15.07 3.13 3.13 Total: -1.00 -27.78 207.82 -3.38 -31.15 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.43 Total: 15.60 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.76 Total: -15.37 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 1.07 Total: -36.73 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.25 Total: -10.09 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.17 Total: 15.74 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -27.78 -3.38 -31.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719137.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.409 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds