Wall clock time and date at job start Mon Mar 30 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99549 * 2 1 4 4 H 1.48502 * 109.46823 * 269.99392 * 3 2 1 5 5 H 1.48494 * 109.47334 * 29.99604 * 3 2 1 6 6 H 1.48499 * 109.46912 * 150.00337 * 3 2 1 7 7 C 1.37876 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99600 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47724 * 60.00340 * 9 7 2 11 11 O 1.42901 * 109.47522 * 299.99816 * 9 7 2 12 12 C 1.50703 * 109.46948 * 179.97438 * 9 7 2 13 13 C 1.38238 * 119.58717 * 124.99588 * 12 9 7 14 14 C 1.38588 * 119.18753 * 179.70249 * 13 12 9 15 15 C 1.38886 * 118.40029 * 0.27923 * 14 13 12 16 16 F 1.35100 * 120.44340 * 179.97438 * 15 14 13 17 17 C 1.38413 * 119.10961 * 0.02562 * 15 14 13 18 18 N 1.31845 * 119.59079 * 305.25276 * 12 9 7 19 19 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 20 20 H 0.96707 * 113.99507 * 300.00277 * 11 9 7 21 21 H 1.08002 * 120.40978 * 359.97438 * 13 12 9 22 22 H 1.07999 * 120.80386 * 180.30037 * 14 13 12 23 23 H 1.08002 * 119.63494 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4990 0.0005 10 1 0.6248 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0005 13 6 2.1499 -4.6113 0.9853 14 6 3.0508 -5.6644 0.9738 15 6 4.0090 -5.7030 -0.0308 16 9 4.9078 -6.7104 -0.0812 17 6 4.0314 -4.6951 -0.9792 18 7 3.1564 -3.7093 -0.9357 19 1 -0.4850 0.8401 -0.0004 20 1 0.9210 -2.5290 1.9984 21 1 1.3915 -4.5492 1.7517 22 1 3.0086 -6.4366 1.7276 23 1 4.7731 -4.7165 -1.7639 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248157.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:21 Heat of formation + Delta-G solvation = -62.849662 kcal Electronic energy + Delta-G solvation = -11927.148506 eV Core-core repulsion = 9461.947250 eV Total energy + Delta-G solvation = -2465.201256 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.65891 -39.62505 -35.70368 -32.37059 -31.90428 -30.49976 -26.87084 -23.79147 -23.24788 -21.05471 -17.40013 -17.19591 -16.53882 -16.02828 -15.45970 -14.63710 -14.31060 -13.75969 -13.47140 -13.26560 -12.66656 -12.37648 -12.00191 -11.25059 -10.94878 -10.88678 -10.18235 -9.59747 -9.51124 -9.08946 -8.75207 -8.45445 -8.10701 -6.06607 -4.23305 1.40837 1.54522 3.28232 3.34671 3.38193 4.14235 4.39525 4.41243 4.86066 5.01120 5.16772 5.27441 5.38449 5.97614 6.04164 6.22830 6.32452 6.45114 7.11069 7.45506 7.80190 8.02176 8.45474 8.78902 9.16870 9.50007 10.97783 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.057570 B = 0.009818 C = 0.008829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.246418 B = 2851.353779 C = 3170.646933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.078 3.922 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.269 3.731 10 H 0.084 0.916 11 O -0.557 6.557 12 C 0.129 3.871 13 C -0.152 4.152 14 C -0.112 4.112 15 C 0.010 3.990 16 F -0.143 7.143 17 C 0.073 3.927 18 N -0.441 5.441 19 H 0.262 0.738 20 H 0.349 0.651 21 H 0.148 0.852 22 H 0.137 0.863 23 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 -8.218 1.804 9.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.128 4.128 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.080 0.920 9 C 0.211 3.789 10 H 0.101 0.899 11 O -0.359 6.359 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.138 4.138 15 C -0.012 4.012 16 F -0.122 7.122 17 C -0.086 4.086 18 N -0.150 5.150 19 H 0.072 0.928 20 H 0.194 0.806 21 H 0.165 0.835 22 H 0.155 0.845 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.572 -7.528 0.721 8.837 hybrid contribution 1.186 0.010 0.991 1.545 sum 5.758 -7.519 1.712 9.624 Atomic orbital electron populations 1.70063 1.05910 1.26738 1.47010 1.25040 0.94782 0.99267 0.93753 0.86546 0.79816 0.82970 0.78317 1.20390 1.21115 1.19840 1.21404 0.93304 0.89846 1.54396 0.92041 1.18399 0.86289 0.87336 0.86857 0.89881 1.86637 1.37926 1.95901 1.15417 1.23309 0.93447 0.95742 0.88366 1.22005 0.99788 0.94105 1.01318 1.21556 0.94686 0.99726 0.97857 1.18809 0.92527 0.89547 1.00269 1.91449 1.65882 1.58560 1.96352 1.22962 0.98533 0.89689 0.97434 1.67671 1.02382 1.20734 1.24246 0.92798 0.80616 0.83481 0.84466 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.79 12.84 55.43 0.71 -24.08 14 2 C 0.08 2.14 5.40 -17.82 -0.10 2.04 14 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 14 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 14 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 14 7 C -0.55 -14.99 8.56 -34.44 -0.29 -15.29 14 8 H 0.06 1.70 7.67 -52.49 -0.40 1.29 14 9 C 0.27 6.71 3.31 -29.04 -0.10 6.62 14 10 H 0.08 2.28 8.14 -51.93 -0.42 1.86 14 11 O -0.56 -13.33 11.61 -35.23 -0.41 -13.74 14 12 C 0.13 2.75 6.12 -82.59 -0.51 2.25 14 13 C -0.15 -2.68 9.24 -39.45 -0.36 -3.04 14 14 C -0.11 -1.73 10.16 -39.21 -0.40 -2.13 14 15 C 0.01 0.16 7.35 -39.28 -0.29 -0.13 14 16 F -0.14 -2.18 17.28 2.25 0.04 -2.14 14 17 C 0.07 1.27 11.17 -17.47 -0.20 1.08 14 18 N -0.44 -9.33 9.95 -9.42 -0.09 -9.42 14 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 14 20 H 0.35 7.23 8.29 45.56 0.38 7.60 14 21 H 0.15 2.32 6.73 -52.49 -0.35 1.97 14 22 H 0.14 1.67 8.06 -52.49 -0.42 1.25 14 23 H 0.16 2.25 8.06 -52.49 -0.42 1.83 14 LS Contribution 219.11 15.07 3.30 3.30 Total: -1.00 -29.81 219.11 -4.49 -34.30 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -0.78 Total: 4.26 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.24 Total: -8.60 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.62 Total: -33.50 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.41 Total: -13.74 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.81 -4.49 -34.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248157.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.550 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds