Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99716 * 0.28083 * 7 2 1 10 10 O 1.21683 * 120.00158 * 359.71943 * 9 7 2 11 11 N 1.34775 * 119.99634 * 179.71971 * 9 7 2 12 12 C 1.47334 * 135.86496 * 359.63316 * 11 9 7 13 13 C 1.52435 * 87.48585 * 154.14902 * 12 11 9 14 14 C 1.52696 * 122.20883 * 150.49336 * 13 12 11 15 15 O 1.44464 * 85.00685 * 149.12089 * 14 13 12 16 16 C 1.44468 * 93.66885 * 336.83307 * 15 14 13 17 17 C 1.47339 * 135.86142 * 179.97438 * 11 9 7 18 18 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 19 19 H 1.08999 * 113.53153 * 268.77973 * 12 11 9 20 20 H 1.09003 * 113.53241 * 39.42711 * 12 11 9 21 21 H 1.09003 * 113.94668 * 263.13808 * 14 13 12 22 22 H 1.09001 * 113.94731 * 35.10770 * 14 13 12 23 23 H 1.08998 * 113.94506 * 269.14924 * 16 15 14 24 24 H 1.08997 * 113.94410 * 137.18092 * 16 15 14 25 25 H 1.08999 * 113.53076 * 320.57562 * 17 11 9 26 26 H 1.09001 * 113.52548 * 91.15127 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4002 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 -0.0051 10 8 0.0583 -2.4805 -0.0051 11 7 1.9491 -3.6476 -0.0103 12 6 3.3663 -4.0503 -0.0186 13 6 2.9311 -5.3511 0.6462 14 6 3.6882 -6.6616 0.4437 15 8 3.2488 -6.9760 1.7835 16 6 3.0658 -5.5901 2.1483 17 6 1.5892 -5.0764 -0.0162 18 1 -0.4850 0.8401 -0.0004 19 1 3.7736 -4.1884 -1.0202 20 1 3.9994 -3.4274 0.6133 21 1 3.2605 -7.3056 -0.3247 22 1 4.7672 -6.5391 0.3494 23 1 3.9481 -5.1293 2.5923 24 1 2.1520 -5.3977 2.7106 25 1 0.7346 -5.3125 0.6178 26 1 1.5021 -5.4989 -1.0172 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248239.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -5.129551 kcal Electronic energy + Delta-G solvation = -12423.771433 eV Core-core repulsion = 10084.533414 eV Total energy + Delta-G solvation = -2339.238019 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.85129 -37.59235 -35.44899 -32.52021 -29.16451 -26.77191 -26.47497 -25.26915 -24.37547 -19.44319 -18.21044 -16.78766 -15.90033 -15.87610 -15.76768 -15.09844 -14.33918 -13.86668 -13.67135 -12.53511 -12.24446 -12.05791 -11.73845 -11.19080 -11.05868 -10.99978 -10.58256 -10.38903 -10.23908 -9.96796 -9.54013 -8.91272 -7.71699 -7.34107 -6.25742 -4.71024 3.10490 3.16993 3.20743 3.76734 4.00987 4.26341 4.40917 4.56308 4.68745 5.21075 5.40631 5.61365 5.72090 5.81001 5.94021 5.96055 6.12691 6.18767 6.20172 6.25529 6.50662 6.65152 7.37774 8.03239 8.40212 8.95535 9.52426 10.50733 10.69881 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.064708 B = 0.009179 C = 0.008579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.610145 B = 3049.786686 C = 3262.865466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.582 3.418 10 O -0.573 6.573 11 N -0.662 5.662 12 C 0.120 3.880 13 C -0.175 4.175 14 C 0.053 3.947 15 O -0.386 6.386 16 C 0.069 3.931 17 C 0.132 3.868 18 H 0.270 0.730 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -7.197 0.729 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.390 3.610 10 O -0.455 6.455 11 N -0.403 5.403 12 C -0.005 4.005 13 C -0.176 4.176 14 C -0.025 4.025 15 O -0.305 6.305 16 C -0.007 4.007 17 C 0.008 3.992 18 H 0.081 0.919 19 H 0.085 0.915 20 H 0.088 0.912 21 H 0.108 0.892 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.585 -7.076 0.877 10.410 hybrid contribution 0.559 0.964 -0.227 1.138 sum 8.144 -6.112 0.650 10.203 Atomic orbital electron populations 1.70020 1.07112 1.27505 1.35049 1.25741 0.94674 1.00372 0.92585 0.86310 0.80101 0.81095 0.78908 1.19648 1.20326 1.18847 1.20792 0.93578 0.88686 1.54211 0.91356 1.18019 0.86447 0.80490 0.76012 1.90623 1.13809 1.85369 1.55716 1.50092 1.06004 1.03852 1.80394 1.22420 0.87598 0.91671 0.98800 1.24615 1.00135 0.95815 0.97047 1.23691 0.98771 0.94216 0.85821 1.89682 1.87092 1.25186 1.28520 1.23543 1.01856 0.80835 0.94480 1.22115 0.94293 0.84454 0.98363 0.91924 0.91452 0.91177 0.89169 0.89929 0.89731 0.88895 0.91498 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.18 11.83 55.55 0.66 -22.53 15 2 C 0.09 2.41 5.50 -17.36 -0.10 2.32 15 3 Si 0.91 20.09 29.56 -169.99 -5.02 15.06 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 7 C -0.54 -15.35 9.37 -35.63 -0.33 -15.68 15 8 H 0.07 1.80 7.75 -52.49 -0.41 1.39 15 9 C 0.58 17.13 8.00 -12.99 -0.10 17.03 15 10 O -0.57 -19.22 15.79 5.20 0.08 -19.14 15 11 N -0.66 -15.48 3.69 -186.84 -0.69 -16.17 15 12 C 0.12 2.10 8.15 -7.33 -0.06 2.04 15 13 C -0.18 -2.70 1.50 -155.56 -0.23 -2.94 15 14 C 0.05 0.65 9.05 36.99 0.33 0.99 15 15 O -0.39 -5.83 12.45 -35.23 -0.44 -6.27 15 16 C 0.07 1.02 9.06 36.99 0.34 1.36 15 17 C 0.13 2.50 8.44 -7.47 -0.06 2.44 15 18 H 0.27 7.34 8.29 -40.82 -0.34 7.00 15 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 20 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 LS Contribution 234.89 15.07 3.54 3.54 Total: -1.00 -35.07 234.89 -5.02 -40.08 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -2.92 Total: -2.13 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.22 Total: 7.55 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.03 Total: -38.69 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.36 Total: -25.41 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -35.07 -5.02 -40.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248239.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.954 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds