Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36878 * 120.00205 * 2 1 4 4 H 1.07992 * 120.00587 * 154.26227 * 3 2 1 5 5 C 1.39050 * 119.99389 * 334.26373 * 3 2 1 6 6 N 1.31361 * 120.00215 * 336.96508 * 5 3 2 7 7 Si 1.86806 * 119.99970 * 156.96692 * 5 3 2 8 8 H 1.48501 * 109.46769 * 94.98164 * 7 5 3 9 9 H 1.48499 * 109.46962 * 214.98371 * 7 5 3 10 10 H 1.48501 * 109.46961 * 334.98282 * 7 5 3 11 11 C 1.34783 * 120.00356 * 179.97438 * 2 1 3 12 12 O 1.21567 * 119.99954 * 176.14747 * 11 2 1 13 13 C 1.47883 * 119.99659 * 356.42518 * 11 2 1 14 14 N 1.34229 * 126.70906 * 7.33857 * 13 11 2 15 15 N 1.28978 * 107.25034 * 179.83239 * 14 13 11 16 16 N 1.28718 * 109.00489 * 0.43257 * 15 14 13 17 17 H 0.97002 * 125.31656 * 179.74421 * 16 15 14 18 18 N 1.28869 * 109.37080 * 359.72443 * 16 15 14 19 19 H 1.09003 * 109.46822 * 215.20851 * 1 2 3 20 20 H 1.08992 * 109.47261 * 335.21071 * 1 2 3 21 21 H 1.09001 * 109.46886 * 95.21841 * 1 2 3 22 22 H 0.96996 * 120.00413 * 180.02562 * 6 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1490 1.2318 0.4061 5 6 1.5576 2.3298 -0.5229 6 7 0.5837 2.2243 -1.3982 7 14 2.1473 4.0174 0.0192 8 1 3.1535 4.5243 -0.9482 9 1 0.9944 4.9519 0.0698 10 1 2.7629 3.9172 1.3669 11 6 2.1390 -1.1672 0.0005 12 8 3.3526 -1.1683 -0.0702 13 6 1.4017 -2.4466 0.0810 14 7 0.0709 -2.6110 0.0204 15 7 -0.1635 -3.8750 0.1246 16 7 0.9545 -4.4993 0.2555 17 1 1.0524 -5.4591 0.3559 18 7 1.9236 -3.6501 0.2320 19 1 -0.3633 -0.8397 0.5925 20 1 -0.3633 0.9329 0.4308 21 1 -0.3633 -0.0935 -1.0234 22 1 0.1711 3.0226 -1.7633 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701256262.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = 84.361775 kcal Electronic energy + Delta-G solvation = -12287.703295 eV Core-core repulsion = 9881.098319 eV Total energy + Delta-G solvation = -2406.604976 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.065 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.47040 -40.30492 -36.85220 -35.42330 -34.09627 -33.59314 -28.53987 -27.38637 -25.47047 -25.27053 -21.73250 -20.26129 -18.96178 -18.26678 -17.76839 -17.01077 -16.22131 -15.78769 -15.30555 -14.68255 -13.83606 -13.71074 -13.32760 -13.09835 -12.69826 -12.57172 -12.35095 -12.07481 -11.81601 -11.59464 -11.07257 -10.86176 -9.78892 -8.48827 -6.07459 -0.04657 0.43309 1.32873 1.44873 1.48186 1.62340 2.17050 2.22025 2.53341 3.00914 3.12323 3.48991 4.09127 4.37231 4.78641 5.04276 5.29417 5.40668 5.63822 5.95422 6.30610 6.94258 7.07362 7.22950 7.79845 8.56047 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.077181 B = 0.010379 C = 0.009436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.695263 B = 2697.105379 C = 2966.553970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.410 5.410 3 C -0.355 4.355 4 H 0.086 0.914 5 C 0.010 3.990 6 N -0.871 5.871 7 Si 0.997 3.003 8 H -0.273 1.273 9 H -0.263 1.263 10 H -0.264 1.264 11 C 0.498 3.502 12 O -0.609 6.609 13 C 0.153 3.847 14 N -0.269 5.269 15 N -0.051 5.051 16 N -0.192 5.192 17 H 0.497 0.503 18 N -0.268 5.268 19 H 0.085 0.915 20 H 0.060 0.940 21 H 0.047 0.953 22 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -7.292 3.348 9.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.126 5.126 3 C -0.483 4.483 4 H 0.103 0.897 5 C -0.196 4.196 6 N -0.506 5.506 7 Si 0.818 3.182 8 H -0.198 1.198 9 H -0.187 1.187 10 H -0.188 1.188 11 C 0.283 3.717 12 O -0.495 6.495 13 C -0.131 4.131 14 N -0.145 5.145 15 N -0.046 5.046 16 N -0.044 5.044 17 H 0.357 0.643 18 N -0.124 5.124 19 H 0.103 0.897 20 H 0.079 0.921 21 H 0.066 0.934 22 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.199 -7.495 3.195 9.166 hybrid contribution 0.652 0.313 -0.051 0.725 sum -3.547 -7.182 3.144 8.605 Atomic orbital electron populations 1.21843 0.78387 1.01600 1.01573 1.43650 1.07377 1.03775 1.57831 1.19780 1.02629 0.84677 1.41206 0.89666 1.26334 0.96415 1.03734 0.93142 1.70097 1.25025 1.32507 1.22946 0.84896 0.78387 0.75742 0.79126 1.19800 1.18720 1.18786 1.16535 0.86156 0.81285 0.87694 1.90606 1.14099 1.86027 1.58748 1.25325 0.88826 0.94582 1.04339 1.76353 1.13257 1.06720 1.18123 1.78741 1.11324 1.00145 1.14431 1.47859 1.00127 1.13465 1.42968 0.64317 1.75056 1.17842 0.99515 1.19956 0.89678 0.92117 0.93397 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.12 8.02 127.77 1.02 6.15 14 2 N -0.41 -22.19 2.99 -662.16 -1.98 -24.17 14 3 C -0.35 -20.07 9.11 84.10 0.77 -19.30 14 4 H 0.09 5.04 7.58 -2.91 -0.02 5.01 14 5 C 0.01 0.52 4.77 84.96 0.41 0.93 14 6 N -0.87 -45.68 11.61 21.68 0.25 -45.43 14 7 Si 1.00 40.33 29.61 68.60 2.03 42.37 14 8 H -0.27 -10.90 7.11 99.48 0.71 -10.19 14 9 H -0.26 -9.87 7.11 99.48 0.71 -9.17 14 10 H -0.26 -10.54 7.11 99.48 0.71 -9.83 14 11 C 0.50 26.79 7.64 86.80 0.66 27.45 14 12 O -0.61 -36.73 16.85 -3.93 -0.07 -36.80 14 13 C 0.15 6.68 7.79 137.08 1.07 7.75 14 14 N -0.27 -10.40 9.09 -52.40 -0.48 -10.88 14 15 N -0.05 -1.55 13.46 37.02 0.50 -1.05 14 16 N -0.19 -4.82 7.90 37.02 0.29 -4.52 14 17 H 0.50 6.07 8.96 -347.50 -3.11 2.95 14 18 N -0.27 -9.81 12.41 -52.35 -0.65 -10.46 14 19 H 0.09 3.59 5.30 -2.39 -0.01 3.58 14 20 H 0.06 2.84 7.11 -2.39 -0.02 2.83 14 21 H 0.05 2.33 7.88 -2.39 -0.02 2.31 14 22 H 0.28 13.56 8.31 -92.71 -0.77 12.79 14 Total: -1.00 -69.68 207.71 1.99 -67.68 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -1.83 Total: 0.28 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 3.93 Total: 22.97 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -2.06 Total: -96.51 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.07 Total: -36.80 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.37 kcal Total: -69.68 1.99 -67.68 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701256262.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.045 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds