Wall clock time and date at job start Mon Mar 30 2020 02:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86798 * 120.00130 * 2 1 4 4 H 1.48493 * 109.47228 * 274.98465 * 3 2 1 5 5 H 1.48496 * 109.47119 * 34.98332 * 3 2 1 6 6 H 1.48499 * 109.46857 * 154.98120 * 3 2 1 7 7 C 1.40050 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99748 * 186.15037 * 7 2 1 9 9 C 1.46368 * 120.00111 * 6.15230 * 7 2 1 10 10 O 1.21692 * 120.00285 * 353.93589 * 9 7 2 11 11 N 1.34780 * 119.99920 * 173.93714 * 9 7 2 12 12 C 1.46502 * 119.99789 * 179.97438 * 11 9 7 13 13 C 1.53000 * 119.81095 * 250.23187 * 12 11 9 14 14 C 1.53001 * 60.57726 * 246.70280 * 13 12 11 15 15 H 1.09002 * 119.80349 * 112.28379 * 14 13 12 16 16 C 1.54533 * 118.02952 * 269.47383 * 14 13 12 17 17 O 1.44423 * 104.76518 * 39.02159 * 16 14 13 18 18 C 1.44431 * 105.27456 * 40.43697 * 17 16 14 19 19 H 0.97004 * 119.99400 * 0.02562 * 1 2 3 20 20 H 0.96997 * 120.00018 * 0.02562 * 11 9 7 21 21 H 1.09001 * 117.42851 * 354.35112 * 13 12 11 22 22 H 1.08996 * 117.43194 * 139.05248 * 13 12 11 23 23 H 1.08992 * 110.45366 * 280.17070 * 16 14 13 24 24 H 1.09006 * 110.33258 * 157.80062 * 16 14 13 25 25 H 1.08999 * 110.36950 * 200.66106 * 18 17 16 26 26 H 1.08997 * 110.46053 * 78.37624 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3947 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4119 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1347 10 8 0.0645 -2.4828 -0.1367 11 7 1.9610 -3.6343 -0.2571 12 6 1.2347 -4.8995 -0.3920 13 6 1.2467 -5.9096 0.7571 14 6 1.9380 -6.2628 -0.5614 15 1 3.0232 -6.3587 -0.5954 16 6 1.1069 -6.9835 -1.6467 17 8 -0.1958 -6.3631 -1.5853 18 6 0.0621 -4.9546 -1.3960 19 1 -0.4849 0.8401 -0.0004 20 1 2.9310 -3.6297 -0.2552 21 1 1.8829 -5.6878 1.6140 22 1 0.3115 -6.4204 0.9864 23 1 1.0312 -8.0478 -1.4243 24 1 1.5537 -6.8311 -2.6293 25 1 -0.8164 -4.4605 -0.9809 26 1 0.3479 -4.4895 -2.3394 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718074310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:07 Heat of formation + Delta-G solvation = -50.353324 kcal Electronic energy + Delta-G solvation = -12496.729664 eV Core-core repulsion = 10155.530595 eV Total energy + Delta-G solvation = -2341.199069 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.98882 -36.91002 -34.31962 -32.56522 -31.23361 -28.02236 -26.15277 -25.25875 -21.08670 -20.36986 -18.81181 -17.22595 -16.30446 -15.56739 -15.17460 -14.77374 -14.11357 -13.77478 -12.81451 -12.67581 -12.25453 -12.18617 -11.59903 -11.19548 -11.11599 -10.99821 -10.54140 -10.29408 -10.11973 -9.62194 -9.25753 -8.89014 -7.67177 -7.53200 -6.26034 -4.71118 3.10741 3.18088 3.21529 3.89812 4.01340 4.26075 4.49407 4.61037 4.98706 5.07108 5.35976 5.43752 5.72086 5.79699 5.85169 6.03184 6.17250 6.26214 6.42533 6.64513 7.06896 7.37859 7.80096 8.00641 8.25487 8.95922 9.43366 10.52335 10.69949 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.077057 B = 0.009079 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.279169 B = 3083.432200 C = 3235.020572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.572 6.572 11 N -0.726 5.726 12 C 0.099 3.901 13 C -0.150 4.150 14 C -0.224 4.224 15 H 0.118 0.882 16 C 0.075 3.925 17 O -0.379 6.379 18 C 0.085 3.915 19 H 0.269 0.731 20 H 0.384 0.616 21 H 0.099 0.901 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -7.890 -1.606 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.454 6.454 11 N -0.381 5.381 12 C 0.009 3.991 13 C -0.190 4.190 14 C -0.244 4.244 15 H 0.135 0.865 16 C -0.002 4.002 17 O -0.298 6.298 18 C 0.008 3.992 19 H 0.080 0.920 20 H 0.217 0.783 21 H 0.118 0.882 22 H 0.113 0.887 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.626 -7.845 -1.646 8.798 hybrid contribution 1.375 0.882 0.061 1.635 sum 5.002 -6.963 -1.586 8.719 Atomic orbital electron populations 1.70023 1.07074 1.27440 1.34813 1.25698 0.94629 1.00317 0.92555 0.86326 0.80199 0.81340 0.78718 1.19757 1.20394 1.18886 1.20834 0.94135 0.89296 1.53895 0.91313 1.18282 0.87284 0.81904 0.76363 1.90581 1.13918 1.85821 1.55107 1.45547 1.08030 1.03546 1.80964 1.21816 0.95740 0.82593 0.98939 1.23245 1.01871 1.02102 0.91754 1.24363 0.99661 1.01043 0.99308 0.86453 1.22790 0.83626 0.97416 0.96370 1.89145 1.25964 1.20608 1.94051 1.23003 0.98875 0.80829 0.96539 0.91981 0.78338 0.88242 0.88744 0.89325 0.91914 0.86692 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.58 11.85 55.55 0.66 -21.92 15 2 C 0.09 2.42 5.49 -17.36 -0.10 2.33 15 3 Si 0.91 19.84 29.56 -169.99 -5.03 14.82 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 7 C -0.54 -15.15 9.53 -35.63 -0.34 -15.49 15 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 15 9 C 0.56 15.58 7.61 -12.99 -0.10 15.48 15 10 O -0.57 -17.95 13.29 5.20 0.07 -17.88 15 11 N -0.73 -16.34 5.67 -47.63 -0.27 -16.61 15 12 C 0.10 1.99 3.25 -130.35 -0.42 1.57 15 13 C -0.15 -2.60 9.88 -26.73 -0.26 -2.86 15 14 C -0.22 -3.47 7.24 -89.12 -0.65 -4.12 15 15 H 0.12 1.56 8.14 -51.93 -0.42 1.14 15 16 C 0.08 1.09 7.54 37.96 0.29 1.38 15 17 O -0.38 -6.99 11.31 -35.23 -0.40 -7.39 15 18 C 0.08 1.75 6.40 37.93 0.24 2.00 15 19 H 0.27 7.21 8.29 -40.82 -0.34 6.87 15 20 H 0.38 7.57 8.81 -40.82 -0.36 7.21 15 21 H 0.10 1.63 8.14 -51.93 -0.42 1.20 15 22 H 0.09 1.61 8.06 -51.93 -0.42 1.19 15 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.12 2.69 7.10 -51.93 -0.37 2.32 15 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 230.79 15.07 3.48 3.48 Total: -1.00 -32.48 230.79 -5.63 -38.12 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.81 Total: 7.11 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.34 Total: 0.29 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.39 Total: -38.54 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.33 Total: -25.27 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.48 -5.63 -38.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718074310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.238 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds