Wall clock time and date at job start Mon Mar 30 2020 02:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86798 * 120.00130 * 2 1 4 4 H 1.48493 * 109.47228 * 274.98465 * 3 2 1 5 5 H 1.48496 * 109.47119 * 34.98332 * 3 2 1 6 6 H 1.48499 * 109.46857 * 154.98120 * 3 2 1 7 7 C 1.40050 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99748 * 186.15037 * 7 2 1 9 9 C 1.46368 * 120.00111 * 6.15230 * 7 2 1 10 10 O 1.21692 * 120.00285 * 353.93589 * 9 7 2 11 11 N 1.34780 * 119.99920 * 173.93714 * 9 7 2 12 12 C 1.46502 * 119.99789 * 179.97438 * 11 9 7 13 13 C 1.53000 * 119.81095 * 250.23187 * 12 11 9 14 14 C 1.53001 * 60.57726 * 246.70280 * 13 12 11 15 15 H 1.09002 * 119.80349 * 112.28379 * 14 13 12 16 16 C 1.54533 * 118.02952 * 269.47383 * 14 13 12 17 17 O 1.44423 * 104.76518 * 39.02159 * 16 14 13 18 18 C 1.44431 * 105.27456 * 40.43697 * 17 16 14 19 19 H 0.97004 * 119.99400 * 0.02562 * 1 2 3 20 20 H 0.96997 * 120.00018 * 0.02562 * 11 9 7 21 21 H 1.09001 * 117.42851 * 354.35112 * 13 12 11 22 22 H 1.08996 * 117.43194 * 139.05248 * 13 12 11 23 23 H 1.08992 * 110.45366 * 280.17070 * 16 14 13 24 24 H 1.09006 * 110.33258 * 157.80062 * 16 14 13 25 25 H 1.08999 * 110.36950 * 200.66106 * 18 17 16 26 26 H 1.08997 * 110.46053 * 78.37624 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3947 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4119 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1347 10 8 0.0645 -2.4828 -0.1367 11 7 1.9610 -3.6343 -0.2571 12 6 1.2347 -4.8995 -0.3920 13 6 1.2467 -5.9096 0.7571 14 6 1.9380 -6.2628 -0.5614 15 1 3.0232 -6.3587 -0.5954 16 6 1.1069 -6.9835 -1.6467 17 8 -0.1958 -6.3631 -1.5853 18 6 0.0621 -4.9546 -1.3960 19 1 -0.4849 0.8401 -0.0004 20 1 2.9310 -3.6297 -0.2552 21 1 1.8829 -5.6878 1.6140 22 1 0.3115 -6.4204 0.9864 23 1 1.0312 -8.0478 -1.4243 24 1 1.5537 -6.8311 -2.6293 25 1 -0.8164 -4.4605 -0.9809 26 1 0.3479 -4.4895 -2.3394 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718074310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:07 Heat of formation + Delta-G solvation = -75.703340 kcal Electronic energy + Delta-G solvation = -12497.828923 eV Core-core repulsion = 10155.530595 eV Total energy + Delta-G solvation = -2342.298328 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.45684 -38.91277 -35.91747 -34.63443 -33.07921 -29.53949 -28.13383 -26.71012 -22.96671 -21.69018 -20.52541 -19.19200 -17.83591 -17.46924 -16.78151 -16.24484 -15.79862 -15.47060 -14.62292 -14.48195 -13.84972 -13.73936 -13.30352 -12.90632 -12.77771 -12.62870 -12.39538 -12.00537 -11.65178 -11.06140 -10.94052 -10.73193 -9.81799 -9.34504 -8.31302 -6.87131 1.40626 1.41362 1.57491 2.21842 2.39361 2.57722 2.68814 3.08943 3.55081 3.61088 3.70968 4.06821 4.08737 4.44675 4.60658 4.70059 4.77501 4.85101 4.96222 5.10768 5.31297 5.65423 5.83307 6.19427 6.26368 6.85525 7.51383 8.47777 8.65541 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.077057 B = 0.009079 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.279169 B = 3083.432200 C = 3235.020572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.542 3.458 10 O -0.619 6.619 11 N -0.714 5.714 12 C 0.043 3.957 13 C -0.149 4.149 14 C -0.172 4.172 15 H 0.152 0.848 16 C 0.066 3.934 17 O -0.390 6.390 18 C 0.094 3.906 19 H 0.275 0.725 20 H 0.398 0.602 21 H 0.110 0.890 22 H 0.092 0.908 23 H 0.125 0.875 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.352 -8.660 -1.722 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.610 4.610 8 H 0.106 0.894 9 C 0.346 3.654 10 O -0.505 6.505 11 N -0.369 5.369 12 C -0.047 4.047 13 C -0.188 4.188 14 C -0.191 4.191 15 H 0.170 0.830 16 C -0.010 4.010 17 O -0.308 6.308 18 C 0.016 3.984 19 H 0.085 0.915 20 H 0.233 0.767 21 H 0.128 0.872 22 H 0.111 0.889 23 H 0.143 0.857 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.094 -8.677 -1.766 10.749 hybrid contribution 0.617 0.965 0.085 1.149 sum 6.711 -7.712 -1.681 10.361 Atomic orbital electron populations 1.70188 1.09526 1.29019 1.36207 1.26952 0.95489 1.04882 0.91165 0.84989 0.78911 0.75141 0.79142 1.18821 1.19844 1.17127 1.21391 0.95249 0.90052 1.54294 0.89381 1.18621 0.86967 0.83691 0.76104 1.90547 1.15889 1.86993 1.57100 1.45054 1.08592 1.03468 1.79743 1.21990 0.97505 0.83320 1.01847 1.23313 1.02520 1.00428 0.92503 1.24563 1.01363 0.95685 0.97487 0.83039 1.23229 0.81755 0.98879 0.97152 1.89127 1.28488 1.19098 1.94110 1.22582 0.97657 0.82008 0.96150 0.91514 0.76701 0.87207 0.88928 0.85707 0.89837 0.90902 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.94 11.85 21.84 0.26 -49.68 15 2 C 0.03 1.68 5.49 85.30 0.47 2.15 15 3 Si 1.00 40.52 29.56 68.60 2.03 42.55 15 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 15 7 C -0.57 -32.15 9.53 24.83 0.24 -31.91 15 8 H 0.09 4.41 7.85 -2.91 -0.02 4.39 15 9 C 0.54 31.14 7.61 86.36 0.66 31.80 15 10 O -0.62 -40.82 13.29 -4.32 -0.06 -40.87 15 11 N -0.71 -32.15 5.67 -422.83 -2.40 -34.55 15 12 C 0.04 1.69 3.25 4.56 0.01 1.70 15 13 C -0.15 -4.86 9.88 30.59 0.30 -4.56 15 14 C -0.17 -4.71 7.24 -9.82 -0.07 -4.78 15 15 H 0.15 3.19 8.14 -2.39 -0.02 3.17 15 16 C 0.07 1.68 7.54 72.50 0.55 2.23 15 17 O -0.39 -14.01 11.31 -148.98 -1.69 -15.70 15 18 C 0.09 4.00 6.40 72.48 0.46 4.47 15 19 H 0.27 15.16 8.29 -92.71 -0.77 14.39 15 20 H 0.40 15.22 8.81 -92.71 -0.82 14.40 15 21 H 0.11 3.35 8.14 -2.39 -0.02 3.33 15 22 H 0.09 3.05 8.06 -2.39 -0.02 3.03 15 23 H 0.13 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.08 1.86 8.14 -2.38 -0.02 1.84 15 25 H 0.07 3.68 7.10 -2.39 -0.02 3.66 15 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 15 Total: -1.00 -73.58 230.79 1.14 -72.44 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.38 Total: 24.71 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 2.62 Total: 1.10 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -2.14 Total: -84.22 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -1.74 Total: -56.57 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -73.58 1.14 -72.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718074310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.268 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds