Wall clock time and date at job start Mon Mar 30 2020 02:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48496 * 109.47198 * 274.98826 * 3 2 1 5 5 H 1.48499 * 109.47154 * 34.99221 * 3 2 1 6 6 H 1.48500 * 109.46952 * 154.98796 * 3 2 1 7 7 C 1.40045 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99668 * 186.12326 * 7 2 1 9 9 C 1.46368 * 120.00325 * 6.11922 * 7 2 1 10 10 O 1.21685 * 119.99833 * 353.84066 * 9 7 2 11 11 N 1.34776 * 120.00078 * 173.56262 * 9 7 2 12 12 C 1.47914 * 127.10344 * 0.29865 * 11 9 7 13 13 C 1.56017 * 105.02604 * 182.58482 * 12 11 9 14 14 H 1.09004 * 116.16069 * 158.70738 * 13 12 11 15 15 C 1.57075 * 99.67274 * 32.81564 * 13 12 11 16 16 C 1.49375 * 127.10342 * 179.97438 * 11 9 7 17 17 H 1.09003 * 116.39971 * 15.32379 * 16 11 9 18 18 C 1.56097 * 103.76326 * 244.98496 * 16 11 9 19 19 O 1.43588 * 105.43776 * 288.30812 * 18 16 11 20 20 H 0.97002 * 120.00074 * 359.97438 * 1 2 3 21 21 H 1.08996 * 110.33279 * 301.46792 * 12 11 9 22 22 H 1.08999 * 110.33116 * 63.59485 * 12 11 9 23 23 H 1.08997 * 112.45938 * 63.73067 * 15 13 12 24 24 H 1.08996 * 112.45895 * 191.33444 * 15 13 12 25 25 H 1.09001 * 110.26048 * 47.46111 * 18 16 11 26 26 H 1.08997 * 110.26214 * 169.41133 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3827 2.1073 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5869 1.4121 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0992 9 6 1.2813 -2.4768 -0.1362 10 8 0.0645 -2.4829 -0.1358 11 7 1.9610 -3.6332 -0.2672 12 6 3.4296 -3.8077 -0.2878 13 6 3.6524 -5.3330 -0.5286 14 1 4.6250 -5.6193 -0.9290 15 6 2.4062 -5.6422 -1.4333 16 6 1.3866 -5.0042 -0.4150 17 1 0.3296 -5.0614 -0.6750 18 6 1.8431 -5.7400 0.8838 19 8 3.2543 -5.9533 0.7263 20 1 -0.4850 0.8401 0.0004 21 1 3.8685 -3.2281 -1.0999 22 1 3.8602 -3.5067 0.6672 23 1 2.4390 -5.1094 -2.3836 24 1 2.2454 -6.7116 -1.5694 25 1 1.6482 -5.1188 1.7579 26 1 1.3269 -6.6954 0.9777 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718268483.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:35 Heat of formation + Delta-G solvation = -53.275693 kcal Electronic energy + Delta-G solvation = -12783.308796 eV Core-core repulsion = 10441.983004 eV Total energy + Delta-G solvation = -2341.325792 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.31585 -36.54298 -33.56539 -32.49731 -29.67453 -29.29294 -26.16245 -24.80804 -21.42725 -20.74403 -18.74703 -17.11530 -16.02841 -15.77674 -14.98287 -14.97151 -13.91619 -13.19018 -13.04596 -12.26671 -11.99546 -11.93445 -11.38914 -11.27329 -11.10431 -11.03168 -10.91245 -10.65331 -10.39361 -10.19326 -9.15087 -8.89392 -7.69207 -7.26482 -6.25610 -4.69282 3.11154 3.18341 3.22267 4.00593 4.07352 4.35344 4.50779 4.78378 5.00153 5.14411 5.31334 5.69771 5.76066 5.95672 6.03531 6.07204 6.20329 6.29700 6.39530 6.48375 7.08485 7.16829 7.39645 8.03377 8.34966 8.97131 9.42411 10.50970 10.69870 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.061122 B = 0.010929 C = 0.009998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.987380 B = 2561.268425 C = 2799.982769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.573 3.427 10 O -0.576 6.576 11 N -0.645 5.645 12 C 0.096 3.904 13 C 0.056 3.944 14 H 0.138 0.862 15 C -0.170 4.170 16 C 0.103 3.897 17 H 0.123 0.877 18 C 0.039 3.961 19 O -0.383 6.383 20 H 0.269 0.731 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -7.230 -1.941 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.381 3.619 10 O -0.459 6.459 11 N -0.386 5.386 12 C -0.029 4.029 13 C -0.001 4.001 14 H 0.155 0.845 15 C -0.209 4.209 16 C -0.002 4.002 17 H 0.141 0.859 18 C -0.039 4.039 19 O -0.302 6.302 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.777 -7.090 -1.758 9.313 hybrid contribution 0.393 0.934 -0.109 1.019 sum 6.170 -6.156 -1.867 8.913 Atomic orbital electron populations 1.70023 1.07122 1.27442 1.35006 1.25740 0.94644 1.00390 0.92554 0.86320 0.80259 0.81265 0.78736 1.19722 1.20348 1.18806 1.20883 0.94143 0.89090 1.53358 0.91239 1.18071 0.86579 0.81042 0.76230 1.90607 1.13801 1.85293 1.56162 1.49614 1.04594 1.05001 1.79346 1.22659 0.84549 0.94408 1.01284 1.25009 0.98295 0.92439 0.84377 0.84452 1.24562 0.96406 1.00857 0.99063 1.24027 0.98861 0.84679 0.92587 0.85938 1.23854 0.81684 0.99125 0.99238 1.88848 1.23500 1.77928 1.39967 0.91993 0.91985 0.91886 0.89480 0.90052 0.91004 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.09 11.85 55.55 0.66 -22.43 15 2 C 0.09 2.43 5.49 -17.37 -0.10 2.34 15 3 Si 0.91 20.21 29.56 -169.99 -5.03 15.19 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 7 C -0.54 -15.43 9.09 -35.64 -0.32 -15.75 15 8 H 0.07 1.85 7.27 -52.48 -0.38 1.47 15 9 C 0.57 16.70 7.82 -12.99 -0.10 16.60 15 10 O -0.58 -18.91 15.41 5.20 0.08 -18.83 15 11 N -0.64 -15.11 2.95 -157.96 -0.47 -15.57 15 12 C 0.10 1.83 5.65 -1.65 -0.01 1.82 15 13 C 0.06 0.86 5.96 -22.91 -0.14 0.72 15 14 H 0.14 1.60 8.14 -51.93 -0.42 1.18 15 15 C -0.17 -2.60 6.90 -22.01 -0.15 -2.75 15 16 C 0.10 2.00 5.35 -62.17 -0.33 1.67 15 17 H 0.12 2.43 8.06 -51.93 -0.42 2.01 15 18 C 0.04 0.69 7.11 38.82 0.28 0.97 15 19 O -0.38 -6.72 11.21 -35.23 -0.39 -7.11 15 20 H 0.27 7.31 8.29 -40.82 -0.34 6.98 15 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 LS Contribution 226.30 15.07 3.41 3.41 Total: -1.00 -34.38 226.30 -5.51 -39.88 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -2.89 Total: -0.15 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.88 Total: 5.62 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.19 Total: -38.01 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.31 Total: -25.94 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -34.38 -5.51 -39.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718268483.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.392 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds