Wall clock time and date at job start Mon Mar 30 2020 02:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48496 * 109.47198 * 274.98826 * 3 2 1 5 5 H 1.48499 * 109.47154 * 34.99221 * 3 2 1 6 6 H 1.48500 * 109.46952 * 154.98796 * 3 2 1 7 7 C 1.40045 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99668 * 186.12326 * 7 2 1 9 9 C 1.46368 * 120.00325 * 6.11922 * 7 2 1 10 10 O 1.21685 * 119.99833 * 353.84066 * 9 7 2 11 11 N 1.34776 * 120.00078 * 173.56262 * 9 7 2 12 12 C 1.47914 * 127.10344 * 0.29865 * 11 9 7 13 13 C 1.56017 * 105.02604 * 182.58482 * 12 11 9 14 14 H 1.09004 * 116.16069 * 158.70738 * 13 12 11 15 15 C 1.57075 * 99.67274 * 32.81564 * 13 12 11 16 16 C 1.49375 * 127.10342 * 179.97438 * 11 9 7 17 17 H 1.09003 * 116.39971 * 15.32379 * 16 11 9 18 18 C 1.56097 * 103.76326 * 244.98496 * 16 11 9 19 19 O 1.43588 * 105.43776 * 288.30812 * 18 16 11 20 20 H 0.97002 * 120.00074 * 359.97438 * 1 2 3 21 21 H 1.08996 * 110.33279 * 301.46792 * 12 11 9 22 22 H 1.08999 * 110.33116 * 63.59485 * 12 11 9 23 23 H 1.08997 * 112.45938 * 63.73067 * 15 13 12 24 24 H 1.08996 * 112.45895 * 191.33444 * 15 13 12 25 25 H 1.09001 * 110.26048 * 47.46111 * 18 16 11 26 26 H 1.08997 * 110.26214 * 169.41133 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3827 2.1073 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5869 1.4121 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0992 9 6 1.2813 -2.4768 -0.1362 10 8 0.0645 -2.4829 -0.1358 11 7 1.9610 -3.6332 -0.2672 12 6 3.4296 -3.8077 -0.2878 13 6 3.6524 -5.3330 -0.5286 14 1 4.6250 -5.6193 -0.9290 15 6 2.4062 -5.6422 -1.4333 16 6 1.3866 -5.0042 -0.4150 17 1 0.3296 -5.0614 -0.6750 18 6 1.8431 -5.7400 0.8838 19 8 3.2543 -5.9533 0.7263 20 1 -0.4850 0.8401 0.0004 21 1 3.8685 -3.2281 -1.0999 22 1 3.8602 -3.5067 0.6672 23 1 2.4390 -5.1094 -2.3836 24 1 2.2454 -6.7116 -1.5694 25 1 1.6482 -5.1188 1.7579 26 1 1.3269 -6.6954 0.9777 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718268483.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:35 Heat of formation + Delta-G solvation = -79.458420 kcal Electronic energy + Delta-G solvation = -12784.444164 eV Core-core repulsion = 10441.983004 eV Total energy + Delta-G solvation = -2342.461160 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.80102 -38.63375 -35.26266 -34.65293 -31.30506 -30.75399 -28.24424 -26.36770 -23.17445 -22.13015 -20.52547 -18.87804 -17.89423 -17.45555 -16.75337 -16.44111 -15.69701 -15.02534 -14.83333 -13.88244 -13.65547 -13.58757 -13.10548 -12.84612 -12.76091 -12.57555 -12.48054 -12.32254 -12.17919 -11.99689 -10.98460 -10.59102 -9.89946 -9.14274 -8.36480 -6.91819 1.36467 1.37663 1.54163 2.18567 2.36551 2.63276 2.78909 3.34461 3.54037 3.66718 3.82517 3.96401 4.35850 4.59425 4.66440 4.67387 4.87695 4.89096 4.99262 5.03773 5.26035 5.44698 5.76956 5.93513 6.31607 6.80222 7.39277 8.37022 8.59820 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.061122 B = 0.010929 C = 0.009998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.987380 B = 2561.268425 C = 2799.982769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.555 3.445 10 O -0.632 6.632 11 N -0.656 5.656 12 C 0.084 3.916 13 C 0.075 3.925 14 H 0.190 0.810 15 C -0.150 4.150 16 C 0.079 3.921 17 H 0.106 0.894 18 C 0.048 3.952 19 O -0.388 6.388 20 H 0.276 0.724 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.118 0.882 25 H 0.040 0.960 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.949 -7.835 -2.657 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.603 4.603 8 H 0.101 0.899 9 C 0.362 3.638 10 O -0.519 6.519 11 N -0.395 5.395 12 C -0.039 4.039 13 C 0.019 3.981 14 H 0.207 0.793 15 C -0.188 4.188 16 C -0.025 4.025 17 H 0.124 0.876 18 C -0.030 4.030 19 O -0.308 6.308 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.107 0.893 24 H 0.136 0.864 25 H 0.058 0.942 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.215 -7.759 -2.477 11.569 hybrid contribution -0.350 1.034 0.123 1.098 sum 7.865 -6.726 -2.354 10.613 Atomic orbital electron populations 1.70184 1.09583 1.29165 1.36091 1.27034 0.95570 1.05025 0.91089 0.84974 0.78827 0.74885 0.79418 1.18394 1.19472 1.17293 1.21372 0.94958 0.89992 1.54006 0.89888 1.18391 0.86258 0.83067 0.76095 1.90543 1.15988 1.86812 1.58594 1.49397 1.06849 1.05353 1.77880 1.22950 0.81734 0.98157 1.01063 1.25342 1.00540 0.88817 0.83448 0.79314 1.24523 0.93971 1.02549 0.97754 1.24351 0.99345 0.83077 0.95715 0.87584 1.23712 0.82417 0.99937 0.96934 1.88852 1.22947 1.77695 1.41297 0.91361 0.91090 0.93123 0.89273 0.86424 0.94161 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.09 11.85 21.83 0.26 -50.83 15 2 C 0.03 1.59 5.49 85.30 0.47 2.06 15 3 Si 1.00 41.52 29.56 68.60 2.03 43.54 15 4 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 6 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 7 C -0.57 -33.25 9.09 24.83 0.23 -33.02 15 8 H 0.08 4.45 7.27 -2.91 -0.02 4.43 15 9 C 0.55 33.61 7.82 86.36 0.68 34.29 15 10 O -0.63 -43.76 15.41 -4.30 -0.07 -43.82 15 11 N -0.66 -31.23 2.95 -771.87 -2.28 -33.51 15 12 C 0.08 3.12 5.65 87.15 0.49 3.62 15 13 C 0.07 2.02 5.96 33.07 0.20 2.21 15 14 H 0.19 3.23 8.14 -2.39 -0.02 3.21 15 15 C -0.15 -4.07 6.90 33.65 0.23 -3.83 15 16 C 0.08 3.03 5.35 47.13 0.25 3.28 15 17 H 0.11 4.35 8.06 -2.39 -0.02 4.33 15 18 C 0.05 1.64 7.11 73.06 0.52 2.16 15 19 O -0.39 -12.47 11.21 -148.98 -1.67 -14.14 15 20 H 0.28 15.46 8.29 -92.71 -0.77 14.69 15 21 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 22 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.12 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 Total: -1.00 -78.71 226.30 2.51 -76.20 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.18 Total: 11.79 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 3.06 Total: 10.77 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.02 Total: -84.34 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -1.74 Total: -57.96 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -78.71 2.51 -76.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718268483.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.261 kcal (2) G-P(sol) polarization free energy of solvation -78.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds