Wall clock time and date at job start Mon Mar 30 2020 02:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99626 * 2 1 4 4 H 1.48500 * 109.46666 * 240.00055 * 3 2 1 5 5 H 1.48496 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47155 * 120.00338 * 3 2 1 7 7 C 1.37870 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00407 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.39122 * 119.99652 * 180.02562 * 10 9 7 12 12 N 1.32565 * 120.11100 * 359.97438 * 11 10 9 13 13 C 1.32303 * 119.94305 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.16575 * 0.02562 * 13 12 11 15 15 N 1.32341 * 120.22628 * 359.97438 * 14 13 12 16 16 C 1.32077 * 120.04982 * 359.97438 * 15 14 13 17 17 F 1.35107 * 120.08192 * 180.02562 * 16 15 14 18 18 H 0.96996 * 119.99825 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.46999 * 59.99382 * 9 7 2 20 20 H 1.09000 * 109.47131 * 299.99815 * 9 7 2 21 21 H 0.96996 * 120.00471 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.91885 * 180.02562 * 13 12 11 23 23 H 1.08004 * 119.88650 * 179.70236 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7395 -4.9242 0.0000 12 7 0.4366 -5.1690 0.0000 13 6 -0.0007 -6.4176 0.0000 14 6 0.8965 -7.4670 0.0005 15 7 2.1986 -7.2303 0.0005 16 6 2.6448 -5.9871 -0.0005 17 9 3.9739 -5.7447 -0.0010 18 1 -0.4850 0.8400 0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6242 -2.5568 0.8903 21 1 3.1568 -3.4353 0.0002 22 1 -1.0622 -6.6166 -0.0004 23 1 0.5346 -8.4846 0.0054 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858518836.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:58 Heat of formation + Delta-G solvation = 5.071204 kcal Electronic energy + Delta-G solvation = -11752.964794 eV Core-core repulsion = 9323.001559 eV Total energy + Delta-G solvation = -2429.963235 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.066 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.61258 -40.43521 -35.86708 -33.46571 -32.61117 -29.85093 -26.99708 -24.33717 -23.36593 -21.81045 -18.36933 -17.63379 -17.12158 -16.06754 -15.98059 -14.85241 -14.67386 -13.79850 -13.78694 -13.30858 -12.95662 -12.63175 -12.09504 -11.25313 -11.11925 -11.00632 -10.78658 -10.33147 -9.68672 -9.48958 -8.82438 -8.62973 -7.16817 -6.24392 -4.31691 1.15822 1.55111 3.22312 3.26909 3.28359 3.55044 3.97501 4.01165 4.28323 4.57420 4.81064 5.12239 5.39379 5.48750 5.79215 6.52693 7.03716 7.38983 7.43966 7.46453 7.74662 7.85059 8.07711 8.46553 8.78396 9.34371 10.85506 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.063966 B = 0.008440 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.625287 B = 3316.565694 C = 3739.047738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.256 3.744 10 N -0.680 5.680 11 C 0.361 3.639 12 N -0.481 5.481 13 C 0.104 3.896 14 C -0.025 4.025 15 N -0.433 5.433 16 C 0.169 3.831 17 F -0.115 7.115 18 H 0.267 0.733 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.408 0.592 22 H 0.170 0.830 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -9.671 0.004 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.135 3.865 10 N -0.306 5.306 11 C 0.115 3.885 12 N -0.205 5.205 13 C -0.058 4.058 14 C -0.186 4.186 15 N -0.152 5.152 16 C 0.001 3.999 17 F -0.095 7.095 18 H 0.077 0.923 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.244 0.756 22 H 0.188 0.812 23 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.840 -9.266 0.005 9.304 hybrid contribution 0.992 0.930 -0.002 1.360 sum 1.832 -8.336 0.003 8.535 Atomic orbital electron populations 1.69953 1.06073 1.27570 1.48564 1.24917 0.94950 0.99437 0.94467 0.86440 0.79425 0.82071 0.78816 1.19995 1.20968 1.19988 1.21175 0.93391 0.90370 1.53797 0.91858 1.19240 0.87966 0.81223 0.98055 1.45648 1.10954 1.01517 1.72445 1.19385 0.89400 0.87328 0.92368 1.68283 1.11856 1.22596 1.17809 1.23506 1.01707 0.87573 0.92987 1.22900 0.86872 1.00976 1.07820 1.67418 1.18254 1.20405 1.09115 1.18376 0.79247 0.89968 1.12272 1.91558 1.29628 1.93892 1.94396 0.92294 0.95051 0.95037 0.75596 0.81247 0.81606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 13.29 55.43 0.74 -24.58 14 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 14 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 14 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 14 7 C -0.55 -14.74 9.28 -34.44 -0.32 -15.06 14 8 H 0.06 1.61 7.60 -52.48 -0.40 1.22 14 9 C 0.26 6.53 5.47 -5.20 -0.03 6.50 14 10 N -0.68 -14.62 5.70 -61.39 -0.35 -14.97 14 11 C 0.36 7.22 7.50 -154.58 -1.16 6.06 14 12 N -0.48 -9.29 9.73 -12.17 -0.12 -9.41 14 13 C 0.10 1.51 11.21 -17.41 -0.20 1.31 14 14 C -0.03 -0.35 11.21 -17.40 -0.19 -0.54 14 15 N -0.43 -7.39 10.50 -13.23 -0.14 -7.53 14 16 C 0.17 3.14 8.47 -16.93 -0.14 2.99 14 17 F -0.12 -2.07 16.68 2.25 0.04 -2.04 14 18 H 0.27 7.20 8.31 -40.82 -0.34 6.86 14 19 H 0.03 0.87 8.14 -51.93 -0.42 0.45 14 20 H 0.03 0.87 8.14 -51.93 -0.42 0.45 14 21 H 0.41 8.08 7.81 -40.82 -0.32 7.76 14 22 H 0.17 1.74 8.06 -52.49 -0.42 1.31 14 23 H 0.17 1.58 8.06 -52.48 -0.42 1.16 14 LS Contribution 221.46 15.07 3.34 3.34 Total: -1.00 -29.72 221.46 -5.20 -34.92 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -1.54 Total: 1.66 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.14 Total: 2.97 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.13 Total: -56.50 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.72 -5.20 -34.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858518836.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.990 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds