Wall clock time and date at job start Mon Mar 30 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99626 * 2 1 4 4 H 1.48500 * 109.46666 * 240.00055 * 3 2 1 5 5 H 1.48496 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47155 * 120.00338 * 3 2 1 7 7 C 1.37870 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00407 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.39122 * 119.99652 * 180.02562 * 10 9 7 12 12 N 1.32565 * 120.11100 * 359.97438 * 11 10 9 13 13 C 1.32303 * 119.94305 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.16575 * 0.02562 * 13 12 11 15 15 N 1.32341 * 120.22628 * 359.97438 * 14 13 12 16 16 C 1.32077 * 120.04982 * 359.97438 * 15 14 13 17 17 F 1.35107 * 120.08192 * 180.02562 * 16 15 14 18 18 H 0.96996 * 119.99825 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.46999 * 59.99382 * 9 7 2 20 20 H 1.09000 * 109.47131 * 299.99815 * 9 7 2 21 21 H 0.96996 * 120.00471 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.91885 * 180.02562 * 13 12 11 23 23 H 1.08004 * 119.88650 * 179.70236 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7395 -4.9242 0.0000 12 7 0.4366 -5.1690 0.0000 13 6 -0.0007 -6.4176 0.0000 14 6 0.8965 -7.4670 0.0005 15 7 2.1986 -7.2303 0.0005 16 6 2.6448 -5.9871 -0.0005 17 9 3.9739 -5.7447 -0.0010 18 1 -0.4850 0.8400 0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6242 -2.5568 0.8903 21 1 3.1568 -3.4353 0.0002 22 1 -1.0622 -6.6166 -0.0004 23 1 0.5346 -8.4846 0.0054 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858518836.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:57 Heat of formation + Delta-G solvation = -16.478152 kcal Electronic energy + Delta-G solvation = -11753.899244 eV Core-core repulsion = 9323.001559 eV Total energy + Delta-G solvation = -2430.897685 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.066 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.00254 -41.80095 -37.48618 -35.11862 -34.36485 -31.39794 -28.78890 -25.91555 -24.83100 -23.57274 -19.93145 -18.99572 -18.69257 -17.85147 -17.38856 -16.74129 -15.93720 -15.35791 -15.29448 -14.87184 -14.35672 -14.32892 -13.99469 -12.92146 -12.83183 -12.61209 -12.36179 -12.23316 -11.50623 -11.22628 -10.64135 -10.17157 -8.71859 -8.31491 -6.47113 -0.16101 0.20047 1.41601 1.44654 1.52846 2.07733 2.37529 2.59379 2.69763 3.03327 3.33337 3.42077 4.13850 4.39143 4.58057 5.00432 5.27488 5.31160 5.50893 5.78720 6.00973 6.17719 6.51858 6.63617 7.04175 7.25394 8.79629 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.063966 B = 0.008440 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.625287 B = 3316.565694 C = 3739.047738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.282 3.718 10 N -0.695 5.695 11 C 0.338 3.662 12 N -0.514 5.514 13 C 0.108 3.892 14 C 0.008 3.992 15 N -0.445 5.445 16 C 0.155 3.845 17 F -0.118 7.118 18 H 0.270 0.730 19 H -0.001 1.001 20 H -0.001 1.001 21 H 0.412 0.588 22 H 0.217 0.783 23 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -10.879 0.005 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.605 4.605 8 H 0.091 0.909 9 C 0.160 3.840 10 N -0.324 5.324 11 C 0.096 3.904 12 N -0.239 5.239 13 C -0.054 4.054 14 C -0.154 4.154 15 N -0.164 5.164 16 C -0.009 4.009 17 F -0.098 7.098 18 H 0.079 0.921 19 H 0.017 0.983 20 H 0.017 0.983 21 H 0.249 0.751 22 H 0.234 0.766 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.862 -10.511 0.006 10.547 hybrid contribution 0.838 1.022 -0.002 1.322 sum 1.700 -9.489 0.004 9.640 Atomic orbital electron populations 1.70086 1.07819 1.28664 1.49472 1.25912 0.95825 1.03357 0.93741 0.85290 0.78076 0.77116 0.79262 1.19068 1.20519 1.19055 1.21579 0.94088 0.91193 1.53637 0.90897 1.18579 0.87923 0.82602 0.94904 1.45205 1.10301 1.01509 1.75369 1.19441 0.90192 0.86882 0.93931 1.68271 1.11947 1.25620 1.18021 1.24372 1.04182 0.85991 0.90865 1.23892 0.85462 1.03224 1.02863 1.67584 1.19973 1.19257 1.09627 1.18284 0.79079 0.90141 1.13420 1.91537 1.29695 1.94007 1.94538 0.92086 0.98321 0.98306 0.75126 0.76640 0.76180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 13.29 21.45 0.28 -53.74 14 2 C 0.01 0.67 5.46 84.65 0.46 1.13 14 3 Si 0.98 42.45 29.54 68.60 2.03 44.48 14 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 14 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 14 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 7 C -0.57 -31.19 9.28 25.60 0.24 -30.95 14 8 H 0.07 3.76 7.60 -2.91 -0.02 3.74 14 9 C 0.28 15.10 5.47 85.63 0.47 15.57 14 10 N -0.69 -31.07 5.70 -348.15 -1.99 -33.05 14 11 C 0.34 13.67 7.50 133.09 1.00 14.67 14 12 N -0.51 -19.64 9.73 -192.42 -1.87 -21.51 14 13 C 0.11 2.77 11.21 84.58 0.95 3.72 14 14 C 0.01 0.17 11.21 84.58 0.95 1.12 14 15 N -0.45 -14.11 10.50 -195.79 -2.06 -16.17 14 16 C 0.16 5.67 8.47 84.99 0.72 6.39 14 17 F -0.12 -4.27 16.68 44.97 0.75 -3.52 14 18 H 0.27 14.80 8.31 -92.71 -0.77 14.02 14 19 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 14 20 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 14 21 H 0.41 17.01 7.81 -92.71 -0.72 16.28 14 22 H 0.22 3.38 8.06 -2.91 -0.02 3.35 14 23 H 0.22 2.70 8.06 -2.91 -0.02 2.68 14 Total: -1.00 -66.28 221.46 2.45 -63.83 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.52 Total: 8.03 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 4.78 Total: 11.65 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.63 Total: -124.47 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.75 Total: -3.52 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -66.28 2.45 -63.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858518836.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.352 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds