Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35237 * 127.29995 * 2 1 4 4 C 1.36760 * 129.62864 * 180.30329 * 3 2 1 5 5 C 1.39778 * 132.15547 * 179.76078 * 4 3 2 6 6 O 1.33702 * 120.00416 * 359.67799 * 5 4 3 7 7 C 1.40457 * 119.99592 * 179.68055 * 5 4 3 8 8 H 1.08001 * 120.00412 * 6.31572 * 7 5 4 9 9 C 1.39221 * 119.99756 * 186.32625 * 7 5 4 10 10 N 1.31303 * 119.99960 * 353.29449 * 9 7 5 11 11 Si 1.86809 * 120.00017 * 173.57485 * 9 7 5 12 12 H 1.48497 * 109.46924 * 94.98209 * 11 9 7 13 13 H 1.48492 * 109.47074 * 214.98170 * 11 9 7 14 14 H 1.48498 * 109.46647 * 334.98411 * 11 9 7 15 15 S 1.73155 * 95.68228 * 359.50672 * 4 3 2 16 16 N 1.31725 * 127.29654 * 179.72463 * 2 1 3 17 17 H 1.08998 * 109.47290 * 270.28429 * 1 2 3 18 18 H 1.09007 * 109.46862 * 30.27711 * 1 2 3 19 19 H 1.08993 * 109.47490 * 150.27794 * 1 2 3 20 20 H 0.97002 * 119.99610 * 180.02562 * 10 9 7 21 21 H 0.96998 * 124.31441 * 0.02562 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.0758 0.0000 4 6 3.6930 1.1314 -0.0056 5 6 4.5882 2.2048 -0.0102 6 8 4.1272 3.4598 -0.0161 7 6 5.9722 1.9650 -0.0088 8 1 6.3456 0.9564 -0.1070 9 6 6.8626 3.0276 0.1194 10 7 6.4171 4.2627 0.1066 11 14 8.6920 2.6964 0.3019 12 1 9.3441 2.7729 -1.0300 13 1 9.2910 3.7112 1.2054 14 1 8.8949 1.3417 0.8753 15 16 3.9344 -0.5833 0.0027 16 7 2.3052 -1.0479 0.0050 17 1 -0.3634 0.0051 1.0276 18 1 -0.3633 0.8876 -0.5182 19 1 -0.3634 -0.8924 -0.5095 20 1 7.0375 5.0030 0.1956 21 1 1.9992 -1.9683 0.0091 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885280494.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = 70.703201 kcal Electronic energy + Delta-G solvation = -9841.245719 eV Core-core repulsion = 7812.215831 eV Total energy + Delta-G solvation = -2029.029887 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.44310 -35.16291 -32.39859 -30.06742 -29.73812 -27.34027 -23.88065 -20.76844 -18.32949 -17.74036 -16.46048 -15.33049 -15.10738 -14.38204 -13.51425 -13.06153 -12.38193 -12.28144 -11.95149 -11.54327 -11.29104 -10.92560 -10.68928 -10.46472 -10.07394 -9.09067 -8.14108 -7.44545 -7.38815 -6.39174 -5.85443 -5.11201 0.79138 1.25233 2.92489 2.95221 3.04029 3.08882 3.60162 3.86929 4.42795 5.07411 5.13971 5.38492 5.52003 5.72952 6.08979 6.44138 6.91674 7.01391 7.46512 7.67169 8.02597 8.49887 8.78526 10.03873 10.24485 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.065932 B = 0.010455 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.579601 B = 2677.431158 C = 3083.924391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.237 3.763 3 C -0.581 4.581 4 C 0.075 3.925 5 C 0.339 3.661 6 O -0.565 6.565 7 C -0.436 4.436 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.686 5.686 11 Si 0.914 3.086 12 H -0.266 1.266 13 H -0.271 1.271 14 H -0.259 1.259 15 S 0.155 5.845 16 N -0.641 5.641 17 H 0.084 0.916 18 H 0.100 0.900 19 H 0.062 0.938 20 H 0.279 0.721 21 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -10.699 0.246 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.094 3.906 3 C -0.617 4.617 4 C -0.050 4.050 5 C 0.245 3.755 6 O -0.467 6.467 7 C -0.468 4.468 8 H 0.095 0.905 9 C -0.165 4.165 10 N -0.315 5.315 11 Si 0.736 3.264 12 H -0.191 1.191 13 H -0.195 1.195 14 H -0.183 1.183 15 S 0.330 5.670 16 N -0.344 5.344 17 H 0.102 0.898 18 H 0.119 0.881 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.845 -11.320 0.250 11.472 hybrid contribution 0.012 -0.657 0.105 0.665 sum -1.833 -11.976 0.356 12.121 Atomic orbital electron populations 1.20416 0.85841 1.03644 1.03319 1.21140 0.95572 0.82673 0.91240 1.33637 1.01922 1.36244 0.89934 1.24204 0.94300 0.92948 0.93552 1.18067 0.87711 0.87352 0.82325 1.93361 1.82841 1.16164 1.54296 1.20359 0.92184 0.94732 1.39498 0.90530 1.26061 1.01729 0.94600 0.94154 1.70437 1.36426 0.99280 1.25342 0.86215 0.81026 0.79771 0.79339 1.19055 1.19525 1.18282 1.83889 0.87151 1.25067 1.70846 1.51868 1.10839 1.12177 1.59517 0.89797 0.88145 0.91953 0.90989 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.46 36.01 0.38 -0.54 14 2 C 0.24 4.55 7.24 -83.71 -0.61 3.94 14 3 C -0.58 -15.20 14.12 -41.18 -0.58 -15.78 14 4 C 0.07 2.04 6.52 -39.54 -0.26 1.79 14 5 C 0.34 10.48 6.88 -38.17 -0.26 10.22 14 6 O -0.56 -20.18 16.29 -13.18 -0.21 -20.39 14 7 C -0.44 -12.18 8.96 -38.38 -0.34 -12.53 14 8 H 0.08 1.91 7.43 -52.49 -0.39 1.52 14 9 C 0.06 1.63 5.47 -17.41 -0.10 1.53 14 10 N -0.69 -19.80 11.61 55.51 0.64 -19.15 14 11 Si 0.91 18.64 29.56 -169.99 -5.03 13.62 14 12 H -0.27 -5.25 7.11 56.52 0.40 -4.84 14 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 14 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 15 S 0.16 3.18 22.97 -107.50 -2.47 0.71 14 16 N -0.64 -10.90 6.33 32.94 0.21 -10.69 14 17 H 0.08 0.94 8.14 -51.93 -0.42 0.52 14 18 H 0.10 1.32 8.14 -51.93 -0.42 0.89 14 19 H 0.06 0.59 8.14 -51.93 -0.42 0.17 14 20 H 0.28 7.03 8.31 -40.82 -0.34 6.70 14 21 H 0.39 4.80 8.96 -40.45 -0.36 4.44 14 LS Contribution 216.87 15.07 3.27 3.27 Total: -1.00 -37.73 216.87 -6.51 -44.25 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -1.16 Total: -0.24 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.77 Total: -11.37 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.85 Total: -29.84 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.21 Total: -20.39 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.47 Total: 0.71 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -37.73 -6.51 -44.25 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885280494.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.950 kcal (2) G-P(sol) polarization free energy of solvation -37.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds