Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35237 * 127.29995 * 2 1 4 4 C 1.36760 * 129.62864 * 180.30329 * 3 2 1 5 5 C 1.39778 * 132.15547 * 179.76078 * 4 3 2 6 6 O 1.33702 * 120.00416 * 359.67799 * 5 4 3 7 7 C 1.40457 * 119.99592 * 179.68055 * 5 4 3 8 8 H 1.08001 * 120.00412 * 6.31572 * 7 5 4 9 9 C 1.39221 * 119.99756 * 186.32625 * 7 5 4 10 10 N 1.31303 * 119.99960 * 353.29449 * 9 7 5 11 11 Si 1.86809 * 120.00017 * 173.57485 * 9 7 5 12 12 H 1.48497 * 109.46924 * 94.98209 * 11 9 7 13 13 H 1.48492 * 109.47074 * 214.98170 * 11 9 7 14 14 H 1.48498 * 109.46647 * 334.98411 * 11 9 7 15 15 S 1.73155 * 95.68228 * 359.50672 * 4 3 2 16 16 N 1.31725 * 127.29654 * 179.72463 * 2 1 3 17 17 H 1.08998 * 109.47290 * 270.28429 * 1 2 3 18 18 H 1.09007 * 109.46862 * 30.27711 * 1 2 3 19 19 H 1.08993 * 109.47490 * 150.27794 * 1 2 3 20 20 H 0.97002 * 119.99610 * 180.02562 * 10 9 7 21 21 H 0.96998 * 124.31441 * 0.02562 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.0758 0.0000 4 6 3.6930 1.1314 -0.0056 5 6 4.5882 2.2048 -0.0102 6 8 4.1272 3.4598 -0.0161 7 6 5.9722 1.9650 -0.0088 8 1 6.3456 0.9564 -0.1070 9 6 6.8626 3.0276 0.1194 10 7 6.4171 4.2627 0.1066 11 14 8.6920 2.6964 0.3019 12 1 9.3441 2.7729 -1.0300 13 1 9.2910 3.7112 1.2054 14 1 8.8949 1.3417 0.8753 15 16 3.9344 -0.5833 0.0027 16 7 2.3052 -1.0479 0.0050 17 1 -0.3634 0.0051 1.0276 18 1 -0.3633 0.8876 -0.5182 19 1 -0.3634 -0.8924 -0.5095 20 1 7.0375 5.0030 0.1956 21 1 1.9992 -1.9683 0.0091 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885280494.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = 40.125816 kcal Electronic energy + Delta-G solvation = -9842.571654 eV Core-core repulsion = 7812.215831 eV Total energy + Delta-G solvation = -2030.355822 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.10220 -37.26492 -34.47122 -32.11080 -30.97007 -29.45319 -25.70446 -22.55299 -20.13173 -19.46737 -18.53928 -17.13932 -16.73736 -15.89228 -15.26691 -14.91756 -13.91508 -13.72362 -13.35009 -13.25964 -13.00917 -12.73768 -12.48994 -12.18305 -11.91070 -11.02482 -10.12704 -9.65348 -9.14578 -8.48608 -7.65030 -7.35532 -0.94268 -0.31154 1.06781 1.28211 1.35257 1.56954 1.75342 2.14449 2.49727 3.40807 3.57927 3.87514 4.25844 4.76623 4.83966 4.90600 5.10733 5.24700 5.58656 5.95934 6.22387 6.38500 6.80182 7.87431 8.26395 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.065932 B = 0.010455 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.579601 B = 2677.431158 C = 3083.924391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.289 3.711 3 C -0.691 4.691 4 C -0.018 4.018 5 C 0.314 3.686 6 O -0.654 6.654 7 C -0.456 4.456 8 H 0.103 0.897 9 C 0.003 3.997 10 N -0.744 5.744 11 Si 1.011 2.989 12 H -0.250 1.250 13 H -0.260 1.260 14 H -0.240 1.240 15 S 0.225 5.775 16 N -0.605 5.605 17 H 0.112 0.888 18 H 0.097 0.903 19 H 0.114 0.886 20 H 0.290 0.710 21 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -14.546 0.425 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.139 3.861 3 C -0.725 4.725 4 C -0.143 4.143 5 C 0.225 3.775 6 O -0.563 6.563 7 C -0.486 4.486 8 H 0.121 0.879 9 C -0.219 4.219 10 N -0.372 5.372 11 Si 0.826 3.174 12 H -0.174 1.174 13 H -0.184 1.184 14 H -0.163 1.163 15 S 0.400 5.600 16 N -0.309 5.309 17 H 0.131 0.869 18 H 0.116 0.884 19 H 0.132 0.868 20 H 0.101 0.899 21 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -1.766 -15.225 0.425 15.333 hybrid contribution -0.222 0.258 0.039 0.343 sum -1.989 -14.967 0.465 15.106 Atomic orbital electron populations 1.20788 0.80654 1.06083 1.05676 1.21552 0.97378 0.80701 0.86425 1.33907 1.05305 1.43235 0.90085 1.23128 0.95591 0.95827 0.99730 1.18749 0.89838 0.87447 0.81433 1.93259 1.83974 1.19679 1.59342 1.20868 0.91775 0.96607 1.39384 0.87933 1.27573 1.08463 0.93536 0.92321 1.70593 1.39504 1.01185 1.25884 0.84822 0.71811 0.80566 0.80158 1.17429 1.18371 1.16284 1.83140 0.88260 1.17300 1.71348 1.50750 1.10076 1.13890 1.56156 0.86943 0.88437 0.86792 0.89900 0.72155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.46 71.24 0.75 -0.75 14 2 C 0.29 10.29 7.24 41.88 0.30 10.59 14 3 C -0.69 -37.27 14.12 21.23 0.30 -36.97 14 4 C -0.02 -1.05 6.52 22.30 0.15 -0.90 14 5 C 0.31 20.93 6.88 23.18 0.16 21.09 14 6 O -0.65 -51.33 16.29 -70.08 -1.14 -52.47 14 7 C -0.46 -26.67 8.96 23.05 0.21 -26.46 14 8 H 0.10 5.18 7.43 -2.91 -0.02 5.16 14 9 C 0.00 0.15 5.47 85.01 0.47 0.62 14 10 N -0.74 -45.55 11.61 21.71 0.25 -45.30 14 11 Si 1.01 38.19 29.56 68.60 2.03 40.21 14 12 H -0.25 -8.80 7.11 99.48 0.71 -8.10 14 13 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 14 H -0.24 -8.26 7.11 99.48 0.71 -7.56 14 15 S 0.23 8.88 22.97 -56.49 -1.30 7.58 14 16 N -0.60 -18.03 6.33 -49.70 -0.31 -18.34 14 17 H 0.11 1.91 8.14 -2.39 -0.02 1.89 14 18 H 0.10 2.25 8.14 -2.38 -0.02 2.23 14 19 H 0.11 1.32 8.14 -2.39 -0.02 1.30 14 20 H 0.29 15.44 8.31 -92.71 -0.77 14.67 14 21 H 0.43 7.70 8.96 -92.95 -0.83 6.87 14 Total: -1.00 -95.49 216.87 2.29 -93.21 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.44 Total: 7.90 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 2.33 Total: -32.79 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.06 Total: -63.64 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -1.14 Total: -52.47 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: 8.88 SS G_CDS: -1.30 Total: 7.58 kcal Total: -95.49 2.29 -93.21 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885280494.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.331 kcal (2) G-P(sol) polarization free energy of solvation -95.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds