Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86792 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47110 * 239.99890 * 3 2 1 5 5 H 1.48497 * 109.47505 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47169 * 119.99873 * 3 2 1 7 7 C 1.40047 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99893 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00149 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99912 * 179.97438 * 9 7 2 12 12 C 1.48149 * 127.83675 * 0.03251 * 11 9 7 13 13 C 1.54392 * 104.61435 * 219.56443 * 12 11 9 14 14 H 1.08996 * 117.61613 * 115.21737 * 13 12 11 15 15 C 1.53007 * 118.89587 * 272.78554 * 13 12 11 16 16 C 1.53004 * 60.55338 * 91.09638 * 15 13 12 17 17 O 1.42903 * 119.53464 * 111.76948 * 16 15 13 18 18 C 1.48141 * 127.83823 * 180.02562 * 11 9 7 19 19 H 0.97003 * 119.99850 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.40456 * 100.77808 * 12 11 9 21 21 H 1.08998 * 110.50766 * 338.39505 * 12 11 9 22 22 H 1.09003 * 117.43933 * 343.45299 * 15 13 12 23 23 H 1.08997 * 117.44346 * 198.74824 * 15 13 12 24 24 H 0.96700 * 114.00311 * 109.29326 * 17 16 15 25 25 H 1.08999 * 110.40806 * 21.65409 * 18 11 9 26 26 H 1.09000 * 110.40885 * 259.21997 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 3.4166 -3.8497 -0.0021 13 6 3.6452 -5.0431 -0.9547 14 1 4.2011 -4.8569 -1.8735 15 6 3.5747 -6.4636 -0.3904 16 6 2.3091 -5.8145 -0.9543 17 8 1.7329 -6.3239 -2.1588 18 6 1.3902 -5.0197 -0.0023 19 1 -0.4850 0.8401 0.0004 20 1 3.7673 -4.0915 1.0011 21 1 3.9242 -2.9612 -0.3775 22 1 3.6410 -6.5781 0.6916 23 1 4.0343 -7.2600 -0.9756 24 1 0.8950 -6.7885 -2.0282 25 1 0.3673 -5.0133 -0.3789 26 1 1.4241 -5.4445 1.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921898835.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = -41.060247 kcal Electronic energy + Delta-G solvation = -12495.069330 eV Core-core repulsion = 10154.273240 eV Total energy + Delta-G solvation = -2340.796091 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.54739 -36.61022 -34.86634 -32.62832 -31.94045 -27.96480 -26.41335 -24.60119 -21.20066 -19.81164 -19.34445 -17.02930 -16.29932 -15.60609 -14.97451 -14.45527 -13.89199 -13.61474 -13.04971 -12.65786 -12.37880 -11.77338 -11.44857 -11.22181 -11.13105 -10.95199 -10.77557 -10.40986 -10.20634 -9.92062 -9.02348 -8.88360 -7.70224 -7.36524 -6.24100 -4.69357 3.14382 3.18913 3.20972 3.76715 3.96713 4.13960 4.45043 4.59771 4.83515 5.14240 5.28154 5.55494 5.72756 5.82888 5.90047 6.07268 6.25680 6.32706 6.41549 6.55980 7.13814 7.40208 7.82768 8.03754 8.34931 8.97223 9.43344 10.51820 10.70635 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.059549 B = 0.010071 C = 0.009183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.091379 B = 2779.583189 C = 3048.331420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.576 3.424 10 O -0.575 6.575 11 N -0.642 5.642 12 C 0.142 3.858 13 C -0.161 4.161 14 H 0.115 0.885 15 C -0.156 4.156 16 C 0.024 3.976 17 O -0.524 6.524 18 C 0.126 3.874 19 H 0.270 0.730 20 H 0.055 0.945 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.380 0.620 25 H 0.079 0.921 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -8.170 0.135 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.384 3.616 10 O -0.457 6.457 11 N -0.381 5.381 12 C 0.017 3.983 13 C -0.181 4.181 14 H 0.133 0.867 15 C -0.194 4.194 16 C -0.018 4.018 17 O -0.329 6.329 18 C 0.001 3.999 19 H 0.081 0.919 20 H 0.073 0.927 21 H 0.103 0.897 22 H 0.114 0.886 23 H 0.119 0.881 24 H 0.228 0.772 25 H 0.098 0.902 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.371 -7.623 -0.128 9.936 hybrid contribution 0.110 0.403 0.052 0.421 sum 6.482 -7.221 -0.076 9.704 Atomic orbital electron populations 1.70011 1.07117 1.27590 1.34909 1.25740 0.94679 1.00387 0.92553 0.86371 0.79788 0.80735 0.79528 1.19183 1.20467 1.19170 1.20822 0.93615 0.88772 1.54263 0.91135 1.18063 0.86620 0.80844 0.76075 1.90614 1.13814 1.85585 1.55658 1.49493 1.04585 1.03987 1.80069 1.21520 0.84630 0.95694 0.96429 1.24148 0.99777 0.91981 1.02191 0.86670 1.23569 0.99692 0.95181 1.00962 1.22984 0.89071 1.00800 0.88973 1.86396 1.41621 1.75819 1.29079 1.21697 0.97270 0.84650 0.96285 0.91897 0.92673 0.89671 0.88579 0.88137 0.77242 0.90215 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.19 11.83 55.55 0.66 -22.53 15 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 15 3 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.54 -15.41 9.07 -35.63 -0.32 -15.73 15 8 H 0.07 1.84 6.50 -52.49 -0.34 1.50 15 9 C 0.58 16.98 7.84 -12.98 -0.10 16.88 15 10 O -0.57 -19.12 15.29 5.20 0.08 -19.04 15 11 N -0.64 -15.28 3.32 -170.98 -0.57 -15.85 15 12 C 0.14 2.69 6.70 -2.41 -0.02 2.67 15 13 C -0.16 -2.67 7.10 -89.21 -0.63 -3.30 15 14 H 0.12 1.84 8.14 -51.93 -0.42 1.42 15 15 C -0.16 -2.11 10.11 -26.73 -0.27 -2.38 15 16 C 0.02 0.41 3.90 -89.24 -0.35 0.07 15 17 O -0.52 -8.70 13.96 -35.23 -0.49 -9.19 15 18 C 0.13 2.49 6.83 -2.43 -0.02 2.47 15 19 H 0.27 7.38 8.29 -40.82 -0.34 7.05 15 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.08 1.63 6.70 -51.93 -0.35 1.28 15 22 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.10 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.38 4.54 9.12 45.56 0.42 4.95 15 25 H 0.08 1.68 7.88 -51.93 -0.41 1.27 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 231.54 15.07 3.49 3.49 Total: -1.00 -35.54 231.54 -5.59 -41.13 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -1.93 Total: 3.85 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.81 Total: 2.99 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.09 Total: -38.38 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.41 Total: -28.23 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -35.54 -5.59 -41.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921898835.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.073 kcal (2) G-P(sol) polarization free energy of solvation -35.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds