Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86792 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47110 * 239.99890 * 3 2 1 5 5 H 1.48497 * 109.47505 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47169 * 119.99873 * 3 2 1 7 7 C 1.40047 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99893 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00149 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99912 * 179.97438 * 9 7 2 12 12 C 1.48149 * 127.83675 * 0.03251 * 11 9 7 13 13 C 1.54392 * 104.61435 * 219.56443 * 12 11 9 14 14 H 1.08996 * 117.61613 * 115.21737 * 13 12 11 15 15 C 1.53007 * 118.89587 * 272.78554 * 13 12 11 16 16 C 1.53004 * 60.55338 * 91.09638 * 15 13 12 17 17 O 1.42903 * 119.53464 * 111.76948 * 16 15 13 18 18 C 1.48141 * 127.83823 * 180.02562 * 11 9 7 19 19 H 0.97003 * 119.99850 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.40456 * 100.77808 * 12 11 9 21 21 H 1.08998 * 110.50766 * 338.39505 * 12 11 9 22 22 H 1.09003 * 117.43933 * 343.45299 * 15 13 12 23 23 H 1.08997 * 117.44346 * 198.74824 * 15 13 12 24 24 H 0.96700 * 114.00311 * 109.29326 * 17 16 15 25 25 H 1.08999 * 110.40806 * 21.65409 * 18 11 9 26 26 H 1.09000 * 110.40885 * 259.21997 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 3.4166 -3.8497 -0.0021 13 6 3.6452 -5.0431 -0.9547 14 1 4.2011 -4.8569 -1.8735 15 6 3.5747 -6.4636 -0.3904 16 6 2.3091 -5.8145 -0.9543 17 8 1.7329 -6.3239 -2.1588 18 6 1.3902 -5.0197 -0.0023 19 1 -0.4850 0.8401 0.0004 20 1 3.7673 -4.0915 1.0011 21 1 3.9242 -2.9612 -0.3775 22 1 3.6410 -6.5781 0.6916 23 1 4.0343 -7.2600 -0.9756 24 1 0.8950 -6.7885 -2.0282 25 1 0.3673 -5.0133 -0.3789 26 1 1.4241 -5.4445 1.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921898835.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = -69.973593 kcal Electronic energy + Delta-G solvation = -12496.323107 eV Core-core repulsion = 10154.273240 eV Total energy + Delta-G solvation = -2342.049867 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.03297 -38.61286 -36.33810 -34.72991 -33.65157 -29.67820 -28.28687 -26.36521 -22.51980 -21.39867 -21.09095 -18.71339 -18.04706 -17.51337 -16.55499 -16.13966 -15.61330 -15.19552 -14.62459 -14.26853 -13.88207 -13.66429 -13.19420 -13.08741 -12.72240 -12.49966 -12.42891 -12.10252 -12.03880 -11.25590 -10.95560 -10.33897 -9.89733 -9.27147 -8.34583 -6.91322 1.38486 1.42314 1.54566 2.20032 2.38471 2.51942 2.60965 3.08766 3.35506 3.66339 3.78296 3.98208 4.23456 4.52482 4.64609 4.75151 4.81862 4.91359 5.07930 5.21074 5.29593 5.43301 5.94756 6.31623 6.73036 6.81156 7.40173 8.37076 8.61078 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.059549 B = 0.010071 C = 0.009183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.091379 B = 2779.583189 C = 3048.331420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.556 3.444 10 O -0.633 6.633 11 N -0.657 5.657 12 C 0.137 3.863 13 C -0.173 4.173 14 H 0.120 0.880 15 C -0.106 4.106 16 C 0.009 3.991 17 O -0.539 6.539 18 C 0.120 3.880 19 H 0.276 0.724 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.119 0.881 23 H 0.128 0.872 24 H 0.397 0.603 25 H 0.051 0.949 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 -8.713 0.386 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.602 4.602 8 H 0.108 0.892 9 C 0.364 3.636 10 O -0.520 6.520 11 N -0.394 5.394 12 C 0.014 3.986 13 C -0.192 4.192 14 H 0.138 0.862 15 C -0.143 4.143 16 C -0.034 4.034 17 O -0.347 6.347 18 C -0.004 4.004 19 H 0.086 0.914 20 H 0.099 0.901 21 H 0.095 0.905 22 H 0.138 0.862 23 H 0.146 0.854 24 H 0.248 0.752 25 H 0.070 0.930 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.991 -8.240 0.126 12.196 hybrid contribution -0.703 0.454 -0.034 0.838 sum 8.288 -7.786 0.092 11.372 Atomic orbital electron populations 1.70189 1.09667 1.29250 1.36089 1.27069 0.95589 1.05115 0.91045 0.85008 0.78189 0.74281 0.80449 1.17832 1.19716 1.17419 1.21365 0.94747 0.89436 1.54643 0.89195 1.18438 0.86292 0.82944 0.75932 1.90550 1.16121 1.87107 1.58224 1.49310 1.07112 1.04260 1.78745 1.21729 0.81480 0.96788 0.98573 1.24140 0.99920 0.92773 1.02371 0.86215 1.23670 0.94829 0.93236 1.02592 1.22873 0.88886 1.02658 0.88933 1.86340 1.42951 1.76156 1.29302 1.21879 0.96615 0.83430 0.98436 0.91373 0.90147 0.90549 0.86237 0.85440 0.75229 0.92992 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.35 11.83 21.84 0.26 -51.09 15 2 C 0.03 1.53 5.50 85.30 0.47 2.00 15 3 Si 1.00 41.23 29.56 68.60 2.03 43.26 15 4 H -0.25 -9.86 7.11 99.48 0.71 -9.16 15 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 6 H -0.25 -9.57 7.11 99.48 0.71 -8.86 15 7 C -0.57 -32.96 9.07 24.83 0.23 -32.73 15 8 H 0.09 4.68 6.50 -2.91 -0.02 4.66 15 9 C 0.56 33.95 7.84 86.36 0.68 34.63 15 10 O -0.63 -44.36 15.29 -4.31 -0.07 -44.42 15 11 N -0.66 -31.62 3.32 -813.09 -2.70 -34.32 15 12 C 0.14 5.00 6.70 86.54 0.58 5.58 15 13 C -0.17 -5.25 7.10 -9.88 -0.07 -5.32 15 14 H 0.12 3.54 8.14 -2.39 -0.02 3.52 15 15 C -0.11 -2.37 10.11 30.60 0.31 -2.06 15 16 C 0.01 0.29 3.90 -9.90 -0.04 0.25 15 17 O -0.54 -17.10 13.96 -148.98 -2.08 -19.18 15 18 C 0.12 4.74 6.83 86.52 0.59 5.33 15 19 H 0.28 15.56 8.29 -92.71 -0.77 14.79 15 20 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 21 H 0.08 2.87 6.70 -2.39 -0.02 2.85 15 22 H 0.12 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.13 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.40 9.11 9.12 -74.06 -0.68 8.43 15 25 H 0.05 2.29 7.88 -2.39 -0.02 2.27 15 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 Total: -1.00 -80.60 231.54 0.71 -79.89 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.53 Total: 18.19 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 2.74 Total: 7.68 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -2.44 Total: -85.41 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -2.15 Total: -63.60 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -80.60 0.71 -79.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921898835.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.915 kcal (2) G-P(sol) polarization free energy of solvation -80.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds