Wall clock time and date at job start Mon Mar 30 2020 01:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37374 * 121.00702 * 2 1 4 4 C 1.38860 * 111.19910 * 179.79387 * 3 2 1 5 5 C 1.47022 * 128.01034 * 180.17211 * 4 3 2 6 6 O 1.21910 * 119.99902 * 0.26781 * 5 4 3 7 7 C 1.41738 * 119.99762 * 180.27964 * 5 4 3 8 8 H 1.08004 * 120.00265 * 359.97438 * 7 5 4 9 9 C 1.40369 * 119.99849 * 179.97438 * 7 5 4 10 10 N 1.30513 * 120.00219 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00262 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47100 * 59.99798 * 11 9 7 13 13 H 1.48496 * 109.47607 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46962 * 300.00165 * 11 9 7 15 15 S 1.77064 * 103.97770 * 0.41104 * 4 3 2 16 16 N 1.29721 * 121.00423 * 180.28396 * 2 1 3 17 17 H 1.09002 * 109.47152 * 269.74208 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.74308 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.74289 * 1 2 3 20 20 H 1.08002 * 124.39683 * 359.97438 * 3 2 1 21 21 H 0.96997 * 120.00631 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2147 1.1774 0.0000 4 6 3.5830 0.9409 0.0047 5 6 4.6724 1.9281 0.0097 6 8 4.4152 3.1198 0.0150 7 6 6.0218 1.4944 0.0080 8 1 6.2498 0.4387 0.0036 9 6 7.0620 2.4369 0.0123 10 7 6.7866 3.7127 0.0172 11 14 8.8404 1.8654 0.0109 12 1 9.0980 1.0523 -1.2047 13 1 9.7401 3.0468 0.0166 14 1 9.0969 1.0426 1.2203 15 16 3.7118 -0.8250 -0.0040 16 7 2.1752 -1.1119 -0.0055 17 1 -0.3633 -0.0046 1.0277 18 1 -0.3633 -0.8877 -0.5178 19 1 -0.3633 0.8923 -0.5099 20 1 1.7652 2.1595 -0.0004 21 1 7.5054 4.3640 0.0205 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953047447.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:13 Heat of formation + Delta-G solvation = -12.730565 kcal Electronic energy + Delta-G solvation = -9907.009408 eV Core-core repulsion = 7874.361561 eV Total energy + Delta-G solvation = -2032.647847 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.72553 -36.58206 -32.86181 -30.49675 -29.57949 -27.30921 -23.47608 -20.46884 -18.85202 -17.68188 -16.05304 -15.42690 -14.43188 -14.26921 -13.31164 -12.97294 -12.44161 -12.36234 -12.02405 -11.82030 -11.51378 -11.07923 -10.80956 -10.53350 -10.06791 -9.94148 -9.14471 -8.54162 -7.89429 -7.74888 -6.50440 -5.10297 1.33413 2.33007 2.74595 2.93483 3.06029 3.06492 3.08392 3.90017 4.26909 5.31507 5.52660 5.63376 5.72696 5.81818 6.10980 6.30504 6.46682 6.80591 7.05818 7.34738 7.82727 8.58531 8.60413 10.10621 10.31700 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.066580 B = 0.010614 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.446503 B = 2637.349308 C = 3042.650686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.085 3.915 3 C -0.187 4.187 4 C -0.187 4.187 5 C 0.412 3.588 6 O -0.530 6.530 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.078 3.922 10 N -0.728 5.728 11 Si 0.912 3.088 12 H -0.262 1.262 13 H -0.276 1.276 14 H -0.262 1.262 15 S 0.365 5.635 16 N -0.567 5.567 17 H 0.071 0.929 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.160 0.840 21 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 -5.585 -0.028 6.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.219 4.219 4 C -0.319 4.319 5 C 0.306 3.694 6 O -0.419 6.419 7 C -0.537 4.537 8 H 0.094 0.906 9 C -0.146 4.146 10 N -0.356 5.356 11 Si 0.735 3.265 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.186 1.186 15 S 0.521 5.479 16 N -0.396 5.396 17 H 0.089 0.911 18 H 0.087 0.913 19 H 0.091 0.909 20 H 0.177 0.823 21 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.678 -6.903 -0.036 7.404 hybrid contribution -0.141 1.258 0.019 1.266 sum -2.818 -5.645 -0.017 6.309 Atomic orbital electron populations 1.20415 0.88101 1.02737 1.02450 1.20807 0.98469 0.87394 1.02203 1.21835 0.92563 0.99551 1.07951 1.29161 0.99954 1.00859 1.01889 1.17280 0.85762 0.86173 0.80188 1.90573 1.84951 1.16771 1.49597 1.20886 0.91570 0.94630 1.46657 0.90578 1.26003 1.01630 0.94317 0.92676 1.69919 1.34708 1.01723 1.29250 0.86327 0.80705 0.79290 0.80190 1.18598 1.20043 1.18603 1.81430 1.03571 1.00897 1.61980 1.72025 1.08147 1.31616 1.27858 0.91069 0.91316 0.90869 0.82281 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.24 36.01 0.37 -0.69 14 2 C 0.08 1.61 6.64 -83.80 -0.56 1.05 14 3 C -0.19 -3.97 10.12 -39.67 -0.40 -4.37 14 4 C -0.19 -4.44 6.70 -35.79 -0.24 -4.68 14 5 C 0.41 11.53 6.92 -34.69 -0.24 11.29 14 6 O -0.53 -16.64 15.51 5.00 0.08 -16.57 14 7 C -0.50 -13.52 9.09 -37.44 -0.34 -13.86 14 8 H 0.08 1.84 7.32 -52.48 -0.38 1.46 14 9 C 0.08 2.03 5.50 -17.31 -0.10 1.94 14 10 N -0.73 -20.25 11.73 55.57 0.65 -19.60 14 11 Si 0.91 18.55 29.56 -169.99 -5.03 13.52 14 12 H -0.26 -5.18 7.11 56.52 0.40 -4.77 14 13 H -0.28 -5.43 7.11 56.52 0.40 -5.03 14 14 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 15 S 0.37 7.37 22.73 -107.50 -2.44 4.93 14 16 N -0.57 -11.34 11.24 25.46 0.29 -11.05 14 17 H 0.07 0.89 8.14 -51.93 -0.42 0.47 14 18 H 0.07 0.90 8.14 -51.93 -0.42 0.48 14 19 H 0.07 0.89 8.10 -51.93 -0.42 0.47 14 20 H 0.16 3.21 8.06 -52.49 -0.42 2.79 14 21 H 0.28 6.91 8.29 -40.82 -0.34 6.57 14 LS Contribution 215.35 15.07 3.25 3.25 Total: -1.00 -31.26 215.35 -5.92 -37.18 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -1.21 Total: -2.35 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.50 Total: -9.31 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.94 Total: -30.65 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.08 Total: -16.57 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -2.44 Total: 4.93 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -31.26 -5.92 -37.18 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953047447.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.448 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds