Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86802 * 120.00193 * 2 1 4 4 H 1.48496 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46864 * 299.99674 * 3 2 1 6 6 H 1.48498 * 109.47231 * 59.99494 * 3 2 1 7 7 C 1.38630 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99897 * 180.02562 * 7 2 1 9 9 O 1.34800 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.35804 * 116.99939 * 185.06586 * 9 7 2 11 11 C 1.38776 * 120.08915 * 354.40400 * 10 9 7 12 12 C 1.38146 * 120.04583 * 180.02562 * 11 10 9 13 13 C 1.38373 * 120.21559 * 359.71479 * 12 11 10 14 14 C 1.38350 * 120.17557 * 0.56383 * 13 12 11 15 15 F 1.35097 * 120.02650 * 179.71780 * 14 13 12 16 16 C 1.38933 * 119.95628 * 359.43764 * 14 13 12 17 17 N 1.39969 * 120.11227 * 180.29683 * 16 14 13 18 18 H 0.97006 * 120.00091 * 0.02562 * 1 2 3 19 19 H 1.08004 * 119.97959 * 0.04287 * 11 10 9 20 20 H 1.07998 * 119.89842 * 180.02562 * 12 11 10 21 21 H 1.07995 * 119.91098 * 180.30052 * 13 12 11 22 22 H 0.97003 * 119.99483 * 0.02562 * 17 16 14 23 23 H 0.97004 * 120.00046 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3965 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3680 0.0005 10 6 2.0703 -3.5045 0.1079 11 6 3.4565 -3.4401 0.0945 12 6 4.2038 -4.5969 0.2032 13 6 3.5749 -5.8227 0.3318 14 6 2.1935 -5.8980 0.3405 15 9 1.5825 -7.0970 0.4605 16 6 1.4348 -4.7393 0.2316 17 7 0.0370 -4.8111 0.2463 18 1 -0.4850 0.8401 -0.0004 19 1 3.9515 -2.4849 -0.0008 20 1 5.2824 -4.5440 0.1929 21 1 4.1639 -6.7234 0.4214 22 1 -0.4035 -5.6710 0.3330 23 1 -0.4911 -4.0009 0.1705 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953078985.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -49.908376 kcal Electronic energy + Delta-G solvation = -12000.656320 eV Core-core repulsion = 9536.016240 eV Total energy + Delta-G solvation = -2464.640079 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.16223 -39.03522 -36.24360 -33.72213 -32.23237 -28.75062 -27.69401 -25.38156 -21.74389 -21.46464 -18.21831 -17.30504 -16.64754 -15.63366 -15.26335 -14.99255 -14.33097 -14.16477 -13.62254 -13.54691 -13.35853 -12.03505 -11.63969 -11.40621 -11.27008 -10.91846 -10.76191 -10.46088 -9.98193 -9.47951 -8.84364 -7.54713 -6.59402 -6.47858 -4.03461 2.06890 2.30051 3.10789 3.12778 3.18199 3.92027 4.48345 4.59955 4.77393 5.07486 5.45704 5.66444 5.82631 6.07171 6.50303 6.67648 6.81127 6.95068 7.24763 7.33253 7.65359 7.94195 8.18706 8.51594 8.98347 9.66088 10.70280 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.059633 B = 0.010268 C = 0.008795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.426620 B = 2726.161848 C = 3182.788915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.386 4.386 8 H 0.093 0.907 9 O -0.180 6.180 10 C 0.113 3.887 11 C -0.210 4.210 12 C -0.100 4.100 13 C -0.197 4.197 14 C 0.039 3.961 15 F -0.154 7.154 16 C 0.130 3.870 17 N -0.875 5.875 18 H 0.269 0.731 19 H 0.133 0.867 20 H 0.115 0.885 21 H 0.117 0.883 22 H 0.390 0.610 23 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -5.307 0.390 6.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.462 4.462 8 H 0.110 0.890 9 O -0.084 6.084 10 C 0.057 3.943 11 C -0.231 4.231 12 C -0.121 4.121 13 C -0.217 4.217 14 C 0.014 3.986 15 F -0.133 7.133 16 C 0.026 3.974 17 N -0.418 5.418 18 H 0.079 0.921 19 H 0.150 0.850 20 H 0.133 0.867 21 H 0.135 0.865 22 H 0.217 0.783 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.661 -5.102 0.369 6.290 hybrid contribution 0.046 0.561 0.037 0.564 sum 3.707 -4.540 0.406 5.875 Atomic orbital electron populations 1.70036 1.05900 1.27541 1.46546 1.25263 0.95882 0.98747 0.96703 0.85629 0.79153 0.80347 0.78197 1.19075 1.20214 1.20215 1.21351 0.91879 0.80540 1.52416 0.88950 1.83865 1.33902 1.11015 1.79635 1.18599 0.90290 0.86647 0.98724 1.20987 0.92791 0.99271 1.10035 1.20392 0.98685 0.91361 1.01621 1.20370 0.91593 0.98537 1.11187 1.16660 0.90456 0.78445 1.13078 1.91342 1.83804 1.43570 1.94626 1.16929 0.84722 0.90666 1.05075 1.42038 1.02582 1.11273 1.85868 0.92121 0.84974 0.86710 0.86504 0.78282 0.76185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 13.67 55.48 0.76 -23.86 14 2 C 0.04 1.01 5.49 -17.52 -0.10 0.92 14 3 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 14 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 14 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 14 7 C -0.39 -10.48 9.49 30.88 0.29 -10.19 14 8 H 0.09 2.33 5.20 -52.49 -0.27 2.05 14 9 O -0.18 -4.92 9.00 -0.03 0.00 -4.92 14 10 C 0.11 2.69 6.66 -38.94 -0.26 2.44 14 11 C -0.21 -4.50 9.16 -39.42 -0.36 -4.87 14 12 C -0.10 -1.85 10.04 -39.57 -0.40 -2.24 14 13 C -0.20 -3.60 10.02 -39.49 -0.40 -4.00 14 14 C 0.04 0.77 7.31 -39.28 -0.29 0.48 14 15 F -0.15 -2.89 16.64 2.25 0.04 -2.86 14 16 C 0.13 2.83 6.78 -83.45 -0.57 2.26 14 17 N -0.87 -17.04 9.09 32.57 0.30 -16.74 14 18 H 0.27 7.05 8.31 -40.82 -0.34 6.71 14 19 H 0.13 2.78 5.64 -52.48 -0.30 2.49 14 20 H 0.11 1.73 8.06 -52.49 -0.42 1.31 14 21 H 0.12 1.82 8.06 -52.49 -0.42 1.39 14 22 H 0.39 6.47 8.32 -40.82 -0.34 6.13 14 23 H 0.41 8.32 8.20 -40.82 -0.33 7.99 14 LS Contribution 216.01 15.07 3.26 3.26 Total: -1.00 -29.06 216.01 -3.97 -33.03 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -1.22 Total: 12.16 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -2.07 Total: -15.20 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 1.05 Total: -40.60 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: 0.00 Total: -4.92 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.06 -3.97 -33.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953078985.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.875 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds