Wall clock time and date at job start Mon Mar 30 2020 02:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34477 * 126.16610 * 2 1 4 4 C 1.30257 * 108.69836 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.61429 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47345 * 15.00418 * 5 4 3 7 7 O 1.42903 * 109.46442 * 135.00347 * 5 4 3 8 8 C 1.50696 * 109.47163 * 254.99966 * 5 4 3 9 9 H 1.07991 * 120.00427 * 0.02562 * 8 5 4 10 10 C 1.37879 * 119.99614 * 180.02562 * 8 5 4 11 11 N 1.31510 * 120.00261 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 119.99746 * 180.02562 * 10 8 5 13 13 H 1.48505 * 109.47282 * 60.00081 * 12 10 8 14 14 H 1.48504 * 109.47454 * 180.02562 * 12 10 8 15 15 H 1.48510 * 109.47446 * 300.00295 * 12 10 8 16 16 O 1.33960 * 108.76356 * 0.22787 * 4 3 2 17 17 C 1.34334 * 126.16787 * 180.02562 * 2 1 3 18 18 C 1.50701 * 126.43892 * 359.97438 * 17 2 1 19 19 H 1.08997 * 109.46892 * 89.97306 * 1 2 3 20 20 H 1.08998 * 109.47079 * 209.97555 * 1 2 3 21 21 H 1.09001 * 109.46774 * 329.97395 * 1 2 3 22 22 H 0.96700 * 114.00311 * 60.00230 * 7 5 4 23 23 H 0.97001 * 120.00070 * 180.02562 * 11 10 8 24 24 H 1.08994 * 109.47600 * 89.99938 * 18 17 2 25 25 H 1.09004 * 109.46642 * 210.00159 * 18 17 2 26 26 H 1.09005 * 109.47096 * 329.99293 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 6 4.7480 1.5999 -0.0013 6 1 4.4424 2.6118 0.2647 7 8 5.7015 1.1243 0.9510 8 6 5.3698 1.6074 -1.3740 9 1 4.9358 1.0163 -2.1667 10 6 6.4929 2.3691 -1.6178 11 7 7.0218 3.0886 -0.6523 12 14 7.2633 2.3790 -3.3195 13 1 6.2724 2.8741 -4.3086 14 1 8.4514 3.2700 -3.3199 15 1 7.6790 1.0003 -3.6828 16 8 3.5734 -0.6446 -0.0060 17 6 2.2998 -1.0845 -0.0005 18 6 1.8493 -2.5226 -0.0006 19 1 -0.3633 0.0005 -1.0276 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3633 0.8898 0.5143 22 1 6.0182 0.2276 0.7763 23 1 7.8117 3.6248 -0.8240 24 1 1.7403 -2.8692 -1.0282 25 1 2.5902 -3.1354 0.5129 26 1 0.8916 -2.6034 0.5137 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535711389.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:35 Heat of formation + Delta-G solvation = -42.104665 kcal Electronic energy + Delta-G solvation = -12370.766363 eV Core-core repulsion = 10029.924983 eV Total energy + Delta-G solvation = -2340.841380 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.56545 -35.83736 -34.47452 -32.43836 -32.31816 -28.95636 -27.91199 -25.04931 -22.80873 -20.94741 -19.76419 -17.28930 -16.20100 -15.86059 -14.83264 -14.67717 -13.93972 -13.45939 -12.99436 -12.98103 -12.82622 -12.68044 -12.08079 -11.63767 -11.49504 -11.13085 -10.95708 -10.37806 -10.18089 -9.74331 -9.71474 -8.80582 -8.63697 -7.80925 -6.17294 -4.38093 2.14385 3.24738 3.28909 3.30409 3.41248 3.46747 4.29330 4.80904 5.11800 5.18222 5.28933 5.43579 5.55082 5.78476 5.84912 5.97210 5.99541 6.13472 6.62429 6.69407 7.05713 7.31199 7.66168 7.83138 8.58256 8.61726 9.07916 9.36616 10.86574 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.050880 B = 0.009739 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.184379 B = 2874.438262 C = 2949.116718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.020 4.020 3 N -0.504 5.504 4 C 0.220 3.780 5 C 0.318 3.682 6 H 0.103 0.897 7 O -0.552 6.552 8 C -0.572 4.572 9 H 0.060 0.940 10 C 0.084 3.916 11 N -0.855 5.855 12 Si 0.903 3.097 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.274 1.274 16 O -0.199 6.199 17 C -0.091 4.091 18 C -0.057 4.057 19 H 0.068 0.932 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.356 0.644 23 H 0.267 0.733 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -8.348 0.374 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 N -0.235 5.235 4 C 0.013 3.987 5 C 0.259 3.741 6 H 0.121 0.879 7 O -0.354 6.354 8 C -0.610 4.610 9 H 0.078 0.922 10 C -0.124 4.124 11 N -0.489 5.489 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 O -0.087 6.087 17 C -0.144 4.144 18 C -0.114 4.114 19 H 0.087 0.913 20 H 0.086 0.914 21 H 0.090 0.910 22 H 0.201 0.799 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.214 -7.004 0.717 10.819 hybrid contribution 0.649 -1.163 -1.262 1.835 sum -7.565 -8.168 -0.544 11.146 Atomic orbital electron populations 1.20014 0.87469 1.02498 1.02164 1.21463 0.97474 0.88458 1.06537 1.70357 1.00965 1.30812 1.21325 1.28938 0.97178 0.78574 0.94050 1.18337 0.76636 0.88903 0.90224 0.87946 1.86630 1.60987 1.34527 1.53221 1.21340 1.13385 1.31058 0.95239 0.92164 1.24997 0.96153 0.93866 0.97388 1.70045 1.20968 1.26181 1.31741 0.86500 0.78662 0.78280 0.83638 1.19865 1.20848 1.19899 1.84387 1.29287 1.25099 1.69960 1.22942 0.81956 0.97707 1.11796 1.20083 1.01164 0.87262 1.02863 0.91308 0.91438 0.91037 0.79937 0.92323 0.90680 0.90955 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.22 36.00 0.37 -0.53 15 2 C -0.02 -0.38 7.11 -82.81 -0.59 -0.97 15 3 N -0.50 -11.95 11.29 -7.36 -0.08 -12.03 15 4 C 0.22 5.41 7.13 -12.94 -0.09 5.31 15 5 C 0.32 8.50 3.38 -29.03 -0.10 8.40 15 6 H 0.10 2.92 8.14 -51.93 -0.42 2.50 15 7 O -0.55 -14.45 12.72 -35.64 -0.45 -14.90 15 8 C -0.57 -16.01 8.75 -34.44 -0.30 -16.32 15 9 H 0.06 1.69 7.74 -52.49 -0.41 1.29 15 10 C 0.08 2.32 5.40 -17.82 -0.10 2.22 15 11 N -0.85 -24.65 12.84 55.43 0.71 -23.94 15 12 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 15 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 16 O -0.20 -4.48 10.76 5.00 0.05 -4.42 15 17 C -0.09 -1.70 7.39 -35.69 -0.26 -1.96 15 18 C -0.06 -0.71 10.22 36.01 0.37 -0.34 15 19 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.07 0.73 7.16 -51.93 -0.37 0.36 15 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.36 8.24 9.02 45.56 0.41 8.65 15 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.08 0.81 7.17 -51.93 -0.37 0.43 15 LS Contribution 238.15 15.07 3.59 3.59 Total: -1.00 -31.89 238.15 -3.89 -35.79 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -1.99 Total: 4.10 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.70 Total: -4.18 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.63 Total: -35.97 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.40 Total: -19.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.89 -3.89 -35.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535711389.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.316 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds