Wall clock time and date at job start Mon Mar 30 2020 01:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99599 * 2 1 4 4 H 1.48505 * 109.46909 * 269.99523 * 3 2 1 5 5 H 1.48496 * 109.47417 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.46961 * 149.99762 * 3 2 1 7 7 C 1.37873 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00259 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99974 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47386 * 180.02562 * 9 7 2 11 11 C 1.35320 * 126.12567 * 84.99718 * 10 9 7 12 12 C 1.39866 * 107.91898 * 180.02562 * 11 10 9 13 13 N 1.48016 * 125.89905 * 180.02562 * 12 11 10 14 14 O 1.21808 * 120.00231 * 180.02562 * 13 12 11 15 15 O 1.21798 * 119.99808 * 0.02562 * 13 12 11 16 16 N 1.30844 * 108.20609 * 0.02562 * 12 11 10 17 17 N 1.34951 * 126.12862 * 265.04702 * 10 9 7 18 18 H 0.96996 * 126.03407 * 359.97438 * 17 10 9 19 19 H 0.97004 * 120.00353 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47473 * 60.00468 * 9 7 2 21 21 H 1.09002 * 109.47467 * 300.00495 * 9 7 2 22 22 H 1.07992 * 126.03988 * 0.06704 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0010 11 6 4.1905 -3.3984 -1.0880 12 6 4.6686 -4.6386 -0.6527 13 7 4.9977 -5.7940 -1.5173 14 8 5.4081 -6.8283 -1.0218 15 8 4.8581 -5.7106 -2.7244 16 7 4.7748 -4.6012 0.6509 17 7 4.3675 -3.3338 1.0869 18 1 4.3436 -3.0271 2.0068 19 1 -0.4851 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8912 21 1 3.8752 -0.6802 -0.8888 22 1 3.9970 -3.1159 -2.1122 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535801462.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:50 Heat of formation + Delta-G solvation = 67.172735 kcal Electronic energy + Delta-G solvation = -11761.196647 eV Core-core repulsion = 9321.553547 eV Total energy + Delta-G solvation = -2439.643100 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.14369 -41.09989 -36.41352 -33.90447 -32.22220 -31.22382 -28.15811 -26.88533 -23.31385 -21.59202 -20.51988 -18.58161 -17.70847 -17.51517 -17.17539 -17.06064 -14.79396 -14.37035 -13.74934 -13.30708 -12.47136 -12.27856 -11.52236 -11.43229 -11.12183 -11.01077 -10.93583 -10.77744 -10.43031 -9.93308 -9.69279 -8.89992 -8.63163 -6.37596 -4.43328 0.28182 1.09538 1.90146 2.66276 2.96704 3.08398 3.14160 3.17914 4.12649 4.61060 4.93734 5.03651 5.54584 5.62358 6.17642 6.42421 6.48094 6.57319 7.04695 7.19094 7.27697 7.88154 8.10580 8.63284 9.17567 10.74263 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.066344 B = 0.008217 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.940656 B = 3406.743233 C = 3502.170341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.078 3.922 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.037 3.963 10 C 0.168 3.832 11 C -0.229 4.229 12 C 0.123 3.877 13 N 0.062 4.938 14 O -0.145 6.145 15 O -0.136 6.136 16 N -0.238 5.238 17 N -0.427 5.427 18 H 0.453 0.547 19 H 0.270 0.730 20 H 0.041 0.959 21 H 0.054 0.946 22 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 -2.184 0.527 8.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.126 4.126 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.096 0.904 9 C -0.002 4.002 10 C 0.039 3.961 11 C -0.260 4.260 12 C -0.120 4.120 13 N 0.586 4.414 14 O -0.362 6.362 15 O -0.353 6.353 16 N -0.072 5.072 17 N -0.143 5.143 18 H 0.300 0.700 19 H 0.080 0.920 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.415 -2.217 1.882 8.903 hybrid contribution 0.075 1.122 -0.364 1.182 sum 8.489 -1.096 1.517 8.693 Atomic orbital electron populations 1.69867 1.06321 1.27625 1.48393 1.24942 0.94809 0.99103 0.93781 0.86801 0.80170 0.83425 0.79099 1.19614 1.20817 1.18952 1.20727 0.87081 0.95329 1.54124 0.90417 1.18687 0.98316 0.83724 0.99487 1.21902 0.92055 0.97360 0.84777 1.20931 1.12589 0.90334 1.02127 1.22552 1.09405 0.89073 0.90960 1.42258 0.98047 1.00394 1.00689 1.94563 1.46205 1.17202 1.78226 1.94566 1.56555 1.88938 0.95203 1.77166 1.20498 1.00484 1.09023 1.46376 1.49891 1.07791 1.10248 0.69994 0.92003 0.94141 0.92776 0.81089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 13.96 55.43 0.77 -24.11 14 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 14 3 Si 0.88 18.76 27.47 -169.99 -4.67 14.09 14 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 14 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 14 6 H -0.26 -5.24 6.54 56.52 0.37 -4.87 14 7 C -0.53 -13.32 9.65 -34.44 -0.33 -13.66 14 8 H 0.08 2.18 7.98 -52.49 -0.42 1.76 14 9 C 0.04 0.72 4.59 -29.04 -0.13 0.59 14 10 C 0.17 3.04 6.40 -82.26 -0.53 2.51 14 11 C -0.23 -4.16 10.43 -40.01 -0.42 -4.57 14 12 C 0.12 2.28 8.15 -146.41 -1.19 1.09 14 13 N 0.06 1.14 4.45 33.02 0.15 1.28 14 14 O -0.14 -2.67 19.23 -29.46 -0.57 -3.23 14 15 O -0.14 -2.44 19.04 -29.46 -0.56 -3.00 14 16 N -0.24 -4.28 12.67 33.01 0.42 -3.86 14 17 N -0.43 -6.87 7.36 33.48 0.25 -6.62 14 18 H 0.45 5.65 8.96 -182.61 -1.64 4.02 14 19 H 0.27 7.07 8.31 -40.82 -0.34 6.73 14 20 H 0.04 0.74 7.20 -51.93 -0.37 0.37 14 21 H 0.05 1.02 7.57 -51.93 -0.39 0.63 14 22 H 0.17 2.87 8.06 -52.49 -0.42 2.45 14 LS Contribution 217.70 15.07 3.28 3.28 Total: -1.00 -28.19 217.70 -6.04 -34.24 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -2.41 Total: 0.05 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.70 Total: -12.12 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 1.59 Total: -33.31 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -1.13 Total: -6.23 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.67 Total: 14.09 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.19 -6.04 -34.24 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535801462.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.411 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds