Wall clock time and date at job start Mon Mar 30 2020 01:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38232 * 120.40863 * 84.72512 * 12 9 7 14 14 N 1.31843 * 120.82134 * 179.72251 * 13 12 9 15 15 C 1.31870 * 121.74969 * 0.54085 * 14 13 12 16 16 C 1.38427 * 120.72702 * 359.74406 * 15 14 13 17 17 F 1.35096 * 120.44284 * 179.97438 * 16 15 14 18 18 C 1.38589 * 120.40105 * 264.99450 * 12 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 21 21 H 1.08009 * 119.58320 * 359.97438 * 13 12 9 22 22 H 1.08000 * 119.63806 * 179.73196 * 15 14 13 23 23 H 1.08000 * 120.80614 * 0.03241 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2302 -3.6447 -0.0104 13 6 2.7681 -4.1105 1.1747 14 7 3.6213 -5.1156 1.1803 15 6 4.0033 -5.7078 0.0657 16 6 3.5119 -5.2926 -1.1600 17 9 3.9075 -5.9030 -2.2985 18 6 2.6068 -4.2402 -1.2038 19 1 -0.4850 0.8401 -0.0004 20 1 0.9214 -2.5384 1.9924 21 1 2.4826 -3.6480 2.1081 22 1 4.7075 -6.5255 0.1095 23 1 2.2065 -3.8939 -2.1452 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535828654.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:24 Heat of formation + Delta-G solvation = -87.264233 kcal Electronic energy + Delta-G solvation = -11953.635978 eV Core-core repulsion = 9487.376027 eV Total energy + Delta-G solvation = -2466.259951 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.98481 -41.10225 -37.71168 -34.34777 -33.60000 -31.81304 -28.84912 -25.59920 -24.68881 -22.67042 -19.21314 -18.53291 -18.18395 -17.73521 -16.78838 -16.70656 -16.43587 -15.10622 -14.97975 -14.52827 -14.37558 -14.06858 -13.46237 -13.20873 -12.96353 -12.82308 -12.12681 -11.70927 -10.97003 -10.77744 -10.53889 -10.25095 -9.77071 -8.19054 -6.46486 -0.03669 0.14174 1.39840 1.42872 1.53887 2.35990 2.68851 2.99978 3.09479 3.46670 3.77780 3.82269 4.02245 4.29444 4.41566 4.75708 4.85164 5.02663 5.56572 5.62730 5.67582 5.93793 6.62469 6.81977 7.26159 7.42640 8.84580 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.047597 B = 0.010176 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.129779 B = 2750.848518 C = 2906.502010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.033 3.967 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.577 4.577 8 H 0.056 0.944 9 C 0.266 3.734 10 H 0.043 0.957 11 O -0.571 6.571 12 C -0.108 4.108 13 C 0.086 3.914 14 N -0.467 5.467 15 C 0.057 3.943 16 C 0.046 3.954 17 F -0.131 7.131 18 C -0.120 4.120 19 H 0.265 0.735 20 H 0.362 0.638 21 H 0.171 0.829 22 H 0.196 0.804 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 -6.960 -0.341 9.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.170 4.170 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.615 4.615 8 H 0.075 0.925 9 C 0.208 3.792 10 H 0.061 0.939 11 O -0.377 6.377 12 C -0.110 4.110 13 C -0.070 4.070 14 N -0.174 5.174 15 C -0.101 4.101 16 C 0.025 3.975 17 F -0.110 7.110 18 C -0.146 4.146 19 H 0.074 0.926 20 H 0.209 0.791 21 H 0.188 0.812 22 H 0.213 0.787 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.141 -7.226 -0.034 9.483 hybrid contribution 0.280 1.246 -0.863 1.541 sum 6.421 -5.980 -0.897 8.820 Atomic orbital electron populations 1.70187 1.07491 1.27736 1.47551 1.25828 0.95473 1.02661 0.93068 0.85485 0.78953 0.79117 0.77892 1.19140 1.20421 1.20189 1.21778 0.93197 0.91422 1.55076 0.92539 1.18193 0.86503 0.88384 0.86114 0.93897 1.86576 1.38686 1.96271 1.16122 1.22000 0.98309 0.97014 0.93697 1.22708 0.92930 0.92870 0.98513 1.67753 1.11682 1.08215 1.29790 1.23255 1.00260 1.00962 0.85654 1.18772 0.99321 0.95573 0.83883 1.91489 1.89393 1.81639 1.48498 1.21641 0.97595 0.95127 1.00278 0.92575 0.79136 0.81228 0.78692 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.70 12.84 21.45 0.28 -50.43 14 2 C 0.03 1.77 5.40 84.66 0.46 2.23 14 3 Si 0.96 41.67 29.54 68.60 2.03 43.70 14 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 14 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 14 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 14 7 C -0.58 -30.08 8.74 25.60 0.22 -29.86 14 8 H 0.06 2.92 7.74 -2.91 -0.02 2.90 14 9 C 0.27 12.92 3.08 29.10 0.09 13.01 14 10 H 0.04 2.31 8.06 -2.39 -0.02 2.29 14 11 O -0.57 -27.80 12.55 -148.98 -1.87 -29.66 14 12 C -0.11 -4.33 4.95 -19.78 -0.10 -4.43 14 13 C 0.09 3.11 10.49 84.69 0.89 4.00 14 14 N -0.47 -15.53 10.36 -195.66 -2.03 -17.56 14 15 C 0.06 1.67 11.17 84.73 0.95 2.61 14 16 C 0.05 1.45 7.35 22.47 0.17 1.61 14 17 F -0.13 -3.85 17.28 44.97 0.78 -3.08 14 18 C -0.12 -4.35 9.83 22.51 0.22 -4.13 14 19 H 0.27 14.19 8.31 -92.70 -0.77 13.42 14 20 H 0.36 14.96 7.42 -74.06 -0.55 14.41 14 21 H 0.17 5.57 6.64 -2.91 -0.02 5.55 14 22 H 0.20 4.11 8.06 -2.91 -0.02 4.08 14 23 H 0.15 5.07 8.06 -2.91 -0.02 5.05 14 Total: -1.00 -59.83 219.19 2.77 -57.06 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.69 Total: 14.92 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 2.89 Total: -14.95 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -1.75 Total: -67.99 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.87 Total: -29.66 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -59.83 2.77 -57.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535828654.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.206 kcal (2) G-P(sol) polarization free energy of solvation -59.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds