Wall clock time and date at job start Mon Mar 30 2020 01:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 O 1.42896 * 109.46977 * 299.99762 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38637 * 120.79615 * 94.71657 * 12 9 7 14 14 C 1.38192 * 119.18545 * 179.80056 * 13 12 9 15 15 N 1.31874 * 120.82656 * 0.48561 * 14 13 12 16 16 C 1.31840 * 121.74761 * 359.74822 * 15 14 13 17 17 C 1.38464 * 120.72506 * 0.02562 * 16 15 14 18 18 F 1.35109 * 120.44219 * 180.02562 * 17 16 15 19 19 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 20 20 H 0.96699 * 114.00348 * 300.00156 * 11 9 7 21 21 H 1.07997 * 120.40892 * 0.02562 * 13 12 9 22 22 H 1.08007 * 119.58481 * 180.20980 * 14 13 12 23 23 H 1.07999 * 119.63804 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0005 13 6 2.6173 -4.2477 1.1874 14 6 3.5142 -5.2982 1.1483 15 7 4.0087 -5.7223 0.0017 16 6 3.6686 -5.1713 -1.1467 17 6 2.7716 -4.1172 -1.1874 18 9 2.4267 -3.5571 -2.3675 19 1 -0.4850 -0.8401 -0.0004 20 1 0.9209 -2.5290 1.9984 21 1 2.2198 -3.9031 2.1306 22 1 3.8174 -5.7750 2.0688 23 1 4.0949 -5.5455 -2.0657 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535852398.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:43 Heat of formation + Delta-G solvation = -94.085049 kcal Electronic energy + Delta-G solvation = -12207.500942 eV Core-core repulsion = 9740.945218 eV Total energy + Delta-G solvation = -2466.555724 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.95689 -41.08980 -38.24818 -34.46026 -33.49016 -31.85476 -28.79855 -25.65911 -24.37772 -23.02744 -19.57229 -18.89575 -18.32644 -17.91185 -16.81237 -16.43179 -15.69473 -15.26597 -15.14692 -14.88347 -14.51447 -14.46961 -14.10105 -12.99317 -12.66017 -12.42082 -11.97655 -11.89366 -11.00587 -10.75005 -10.56959 -10.20277 -9.93948 -8.71938 -6.59879 -0.06580 0.08269 1.51052 1.57745 1.78264 2.48947 2.65708 3.03430 3.10745 3.45742 3.65532 3.77572 3.87439 3.92816 4.46319 4.68766 4.85535 4.88353 5.32295 5.58815 5.64841 5.97699 6.42851 6.76369 6.96707 7.34505 8.65103 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.045014 B = 0.011897 C = 0.011230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.878332 B = 2352.991699 C = 2492.774927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.010 4.010 3 Si 1.117 2.883 4 H -0.281 1.281 5 H -0.264 1.264 6 H -0.274 1.274 7 C -0.649 4.649 8 H 0.047 0.953 9 C 0.247 3.753 10 H 0.031 0.969 11 O -0.580 6.580 12 C -0.088 4.088 13 C -0.146 4.146 14 C 0.097 3.903 15 N -0.479 5.479 16 C 0.077 3.923 17 C 0.020 3.980 18 F -0.143 7.143 19 H 0.268 0.732 20 H 0.370 0.630 21 H 0.158 0.842 22 H 0.204 0.796 23 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.231 -7.615 2.199 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.213 4.213 3 Si 0.937 3.063 4 H -0.206 1.206 5 H -0.189 1.189 6 H -0.200 1.200 7 C -0.686 4.686 8 H 0.065 0.935 9 C 0.189 3.811 10 H 0.049 0.951 11 O -0.387 6.387 12 C -0.097 4.097 13 C -0.166 4.166 14 C -0.059 4.059 15 N -0.188 5.188 16 C -0.081 4.081 17 C -0.001 4.001 18 F -0.122 7.122 19 H 0.079 0.921 20 H 0.219 0.781 21 H 0.176 0.824 22 H 0.220 0.780 23 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.127 -6.736 1.710 9.954 hybrid contribution -0.431 -0.711 -0.152 0.846 sum 6.695 -7.447 1.558 10.135 Atomic orbital electron populations 1.70791 1.07919 1.31302 1.44671 1.27345 0.96413 1.06283 0.91226 0.82958 0.74178 0.71100 0.78046 1.20639 1.18896 1.19993 1.22497 0.94224 0.92476 1.59435 0.93511 1.18236 0.87182 0.90174 0.85458 0.95109 1.86489 1.39202 1.96404 1.16602 1.21649 0.97696 0.96615 0.93736 1.22107 0.99050 0.97290 0.98125 1.23358 0.92196 0.93106 0.97287 1.67789 1.24156 1.28501 0.98335 1.23141 0.94236 0.91826 0.98874 1.18989 1.01879 0.97937 0.81338 1.91451 1.91163 1.84733 1.44830 0.92100 0.78125 0.82430 0.77982 0.79207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.50 13.53 21.45 0.29 -55.21 14 2 C -0.01 -0.55 5.40 84.65 0.46 -0.09 14 3 Si 1.12 49.05 29.90 68.60 2.05 51.10 14 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 14 5 H -0.26 -10.60 7.11 99.48 0.71 -9.90 14 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 14 7 C -0.65 -35.96 8.75 25.60 0.22 -35.73 14 8 H 0.05 2.58 7.74 -2.91 -0.02 2.56 14 9 C 0.25 12.65 2.50 29.10 0.07 12.73 14 10 H 0.03 1.80 7.74 -2.39 -0.02 1.78 14 11 O -0.58 -28.32 11.69 -148.98 -1.74 -30.06 14 12 C -0.09 -3.72 5.04 -19.63 -0.10 -3.82 14 13 C -0.15 -4.82 9.38 22.35 0.21 -4.61 14 14 C 0.10 2.65 11.18 84.68 0.95 3.60 14 15 N -0.48 -14.55 10.36 -195.66 -2.03 -16.57 14 16 C 0.08 2.46 11.17 84.75 0.95 3.40 14 17 C 0.02 0.80 7.29 22.47 0.16 0.96 14 18 F -0.14 -6.20 16.70 44.97 0.75 -5.44 14 19 H 0.27 16.84 6.47 -92.70 -0.60 16.24 14 20 H 0.37 15.27 7.41 -74.06 -0.55 14.72 14 21 H 0.16 4.47 6.54 -2.91 -0.02 4.45 14 22 H 0.20 3.62 8.06 -2.91 -0.02 3.60 14 23 H 0.19 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -67.09 216.23 3.11 -63.98 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.87 Total: 15.77 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 2.92 Total: -23.56 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.74 Total: -71.79 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.74 Total: -30.06 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.75 Total: -5.44 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.05 Total: 51.10 kcal Total: -67.09 3.11 -63.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535852398.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.103 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds