Wall clock time and date at job start Mon Mar 30 2020 01:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00252 * 2 1 4 4 H 1.48495 * 109.47067 * 270.00587 * 3 2 1 5 5 H 1.48508 * 109.46595 * 30.00206 * 3 2 1 6 6 H 1.48496 * 109.47431 * 150.00036 * 3 2 1 7 7 C 1.38946 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00030 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00060 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00569 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00022 * 179.97438 * 10 9 7 13 13 H 1.09007 * 110.34774 * 317.85933 * 12 10 9 14 14 C 1.54646 * 110.30728 * 79.99347 * 12 10 9 15 15 C 1.54788 * 101.02818 * 143.17877 * 14 12 10 16 16 C 1.51263 * 103.86590 * 336.18048 * 15 14 12 17 17 N 1.37003 * 124.49257 * 196.04282 * 16 15 14 18 18 N 1.28712 * 111.01231 * 16.03945 * 16 15 14 19 19 H 0.97003 * 120.00149 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99894 * 359.97438 * 9 7 2 21 21 H 1.09002 * 111.11581 * 25.22499 * 14 12 10 22 22 H 1.09000 * 111.11713 * 261.12790 * 14 12 10 23 23 H 1.08998 * 110.54977 * 94.77822 * 15 14 12 24 24 H 1.09007 * 110.54390 * 217.58692 * 15 14 12 25 25 H 0.97001 * 120.00194 * 359.97438 * 17 16 15 26 26 H 0.96996 * 119.99925 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 1 0.3977 -4.8124 0.6832 14 6 0.7577 -5.2014 -1.4307 15 6 0.9344 -6.7391 -1.4470 16 6 1.9889 -6.9940 -0.3930 17 7 2.6937 -8.1621 -0.2672 18 7 2.1363 -5.9680 0.3700 19 1 -0.4850 0.8401 0.0004 20 1 0.3534 -2.3906 -0.0016 21 1 1.3873 -4.7258 -2.1827 22 1 -0.2879 -4.9248 -1.5656 23 1 0.0004 -7.2343 -1.1815 24 1 1.2817 -7.0739 -2.4245 25 1 2.5293 -8.8961 -0.8796 26 1 3.3565 -8.2554 0.4348 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003599622.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:28 Heat of formation + Delta-G solvation = -45.830761 kcal Electronic energy + Delta-G solvation = -12183.370584 eV Core-core repulsion = 9874.660380 eV Total energy + Delta-G solvation = -2308.710205 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.89337 -39.09727 -35.96415 -34.86427 -33.23578 -30.85490 -29.20209 -26.59581 -23.28938 -21.37628 -20.37218 -19.66490 -18.05873 -17.67228 -16.65990 -16.60917 -15.88045 -15.67098 -15.13644 -14.63020 -13.89244 -13.60409 -13.50132 -12.98540 -12.83504 -12.57300 -12.43774 -12.12766 -11.64379 -11.51976 -10.43157 -10.14391 -10.02290 -9.13713 -8.47057 -5.96740 1.37147 1.40068 1.53482 1.70586 2.02173 2.30379 2.73530 3.14258 3.25386 3.44613 3.79590 4.06476 4.30908 4.58160 4.71363 4.80780 4.94139 5.04508 5.13679 5.39214 5.97599 6.41178 6.60539 6.67171 7.11639 7.48836 7.56015 8.12354 8.70315 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.081983 B = 0.008077 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.451854 B = 3465.941219 C = 3673.496438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.995 3.005 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.338 4.338 8 H 0.074 0.926 9 N -0.569 5.569 10 C 0.449 3.551 11 O -0.630 6.630 12 C 0.069 3.931 13 H 0.098 0.902 14 C -0.133 4.133 15 C -0.114 4.114 16 C 0.372 3.628 17 N -0.821 5.821 18 N -0.619 5.619 19 H 0.279 0.721 20 H 0.397 0.603 21 H 0.056 0.944 22 H 0.111 0.889 23 H 0.124 0.876 24 H 0.110 0.890 25 H 0.424 0.576 26 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -13.411 -4.200 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.092 0.908 9 N -0.206 5.206 10 C 0.236 3.764 11 O -0.516 6.516 12 C -0.046 4.046 13 H 0.116 0.884 14 C -0.173 4.173 15 C -0.155 4.155 16 C 0.089 3.911 17 N -0.371 5.371 18 N -0.348 5.348 19 H 0.089 0.911 20 H 0.231 0.769 21 H 0.075 0.925 22 H 0.130 0.870 23 H 0.142 0.858 24 H 0.129 0.871 25 H 0.257 0.743 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.057 -12.787 -3.445 13.402 hybrid contribution -0.274 0.671 -0.375 0.816 sum -2.332 -12.116 -3.820 12.916 Atomic orbital electron populations 1.69670 1.06772 1.29392 1.50097 1.26046 0.96609 1.02305 0.96075 0.84913 0.77788 0.76713 0.78791 1.19330 1.19154 1.20086 1.19657 0.92582 0.84154 1.50369 0.90822 1.41883 1.09214 1.04451 1.65077 1.20730 0.87996 0.85848 0.81803 1.90445 1.16383 1.88060 1.56717 1.22121 0.94187 0.90132 0.98150 0.88420 1.23002 1.03425 0.96318 0.94517 1.22217 0.98923 0.94977 0.99361 1.22312 0.89698 0.87582 0.91487 1.41248 1.43784 1.12975 1.39134 1.72990 1.27636 1.01794 1.32367 0.91147 0.76918 0.92500 0.87012 0.85771 0.87138 0.74346 0.76479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.91 13.05 21.66 0.28 -50.62 15 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 15 3 Si 0.99 44.41 29.55 68.60 2.03 46.44 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 7 C -0.34 -20.40 9.68 84.04 0.81 -19.58 15 8 H 0.07 4.77 7.16 -2.91 -0.02 4.75 15 9 N -0.57 -31.62 5.29 -306.98 -1.62 -33.24 15 10 C 0.45 24.30 6.99 87.66 0.61 24.91 15 11 O -0.63 -39.97 16.13 -3.07 -0.05 -40.02 15 12 C 0.07 2.84 3.95 44.74 0.18 3.02 15 13 H 0.10 3.70 8.14 -2.38 -0.02 3.68 15 14 C -0.13 -4.07 6.75 31.77 0.21 -3.85 15 15 C -0.11 -2.45 6.89 30.64 0.21 -2.24 15 16 C 0.37 10.58 8.37 138.18 1.16 11.74 15 17 N -0.82 -15.67 8.99 -49.90 -0.45 -16.12 15 18 N -0.62 -25.03 10.69 -316.79 -3.39 -28.42 15 19 H 0.28 14.35 8.31 -92.71 -0.77 13.58 15 20 H 0.40 20.66 7.90 -92.71 -0.73 19.93 15 21 H 0.06 2.00 7.90 -2.39 -0.02 1.98 15 22 H 0.11 2.79 8.14 -2.39 -0.02 2.77 15 23 H 0.12 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.11 1.80 8.14 -2.38 -0.02 1.78 15 25 H 0.42 4.42 8.95 -92.71 -0.83 3.59 15 26 H 0.41 7.86 8.95 -92.71 -0.83 7.03 15 Total: -1.00 -79.51 234.90 -0.70 -80.21 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -1.16 Total: 27.90 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 3.65 Total: 13.88 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.17 Total: -128.40 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.05 Total: -40.02 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -79.51 -0.70 -80.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003599622.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.383 kcal (2) G-P(sol) polarization free energy of solvation -79.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds