Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.26907 * 39.37146 * 12 10 9 14 14 C 1.54643 * 110.30409 * 277.18295 * 12 10 9 15 15 C 1.54779 * 100.99280 * 216.84587 * 14 12 10 16 16 C 1.51268 * 103.86478 * 23.80180 * 15 14 12 17 17 N 1.36996 * 124.49233 * 163.94302 * 16 15 14 18 18 N 1.28714 * 111.01249 * 343.95995 * 16 15 14 19 19 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 21 21 H 1.08997 * 111.11835 * 334.78396 * 14 12 10 22 22 H 1.09003 * 111.11607 * 98.91508 * 14 12 10 23 23 H 1.09003 * 110.54891 * 265.20427 * 15 14 12 24 24 H 1.09002 * 110.55131 * 142.39689 * 15 14 12 25 25 H 0.96999 * 120.00141 * 180.02562 * 17 16 15 26 26 H 0.97006 * 120.00314 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 1 5.9353 -1.5784 0.6675 14 6 6.1039 -2.1931 -1.4176 15 6 7.3465 -3.1151 -1.3795 16 6 7.0337 -4.0993 -0.2741 17 7 7.6911 -5.2860 -0.0830 18 7 6.0678 -3.6741 0.4628 19 1 -0.4850 0.8401 -0.0004 20 1 3.8648 -0.3633 0.0059 21 1 5.3808 -2.5389 -2.1563 22 1 6.3888 -1.1577 -1.6047 23 1 8.2414 -2.5413 -1.1389 24 1 7.4675 -3.6337 -2.3305 25 1 7.4359 -5.8694 0.6487 26 1 8.4113 -5.5431 -0.6798 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003599624.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = -9.065176 kcal Electronic energy + Delta-G solvation = -12227.985316 eV Core-core repulsion = 9920.869387 eV Total energy + Delta-G solvation = -2307.115929 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.52454 -37.49002 -33.97347 -33.67790 -31.55777 -29.73865 -27.88805 -24.54058 -21.85406 -19.86974 -19.04027 -18.04643 -16.73609 -16.26116 -15.55356 -14.89661 -14.41330 -13.76151 -13.41103 -12.92644 -12.50706 -12.38722 -12.08243 -11.78760 -11.40846 -11.07808 -10.62929 -10.52200 -9.90768 -9.49047 -9.07349 -8.54566 -8.09557 -7.87451 -6.23854 -3.74620 2.82285 3.08334 3.11356 3.19486 3.65135 3.81740 4.16575 4.48762 4.65809 4.89805 5.17187 5.31508 5.51009 5.65337 5.83532 5.91552 6.06311 6.12683 6.32454 7.31310 7.61781 7.67718 8.22251 8.45858 8.70242 9.03808 9.51067 9.94840 10.89647 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.066646 B = 0.009085 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.027230 B = 3081.228216 C = 3353.307795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.040 3.960 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.118 0.882 9 N -0.593 5.593 10 C 0.467 3.533 11 O -0.559 6.559 12 C 0.062 3.938 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.127 4.127 16 C 0.364 3.636 17 N -0.841 5.841 18 N -0.547 5.547 19 H 0.272 0.728 20 H 0.370 0.630 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.404 0.596 26 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.267 -1.908 -3.203 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.431 4.431 8 H 0.136 0.864 9 N -0.232 5.232 10 C 0.252 3.748 11 O -0.440 6.440 12 C -0.054 4.054 13 H 0.108 0.892 14 C -0.177 4.177 15 C -0.168 4.168 16 C 0.080 3.920 17 N -0.390 5.390 18 N -0.272 5.272 19 H 0.083 0.917 20 H 0.202 0.798 21 H 0.102 0.898 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.234 0.766 26 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 15.973 -2.570 -2.423 16.359 hybrid contribution 1.075 1.511 -0.610 1.952 sum 17.048 -1.059 -3.033 17.348 Atomic orbital electron populations 1.69626 1.05619 1.27359 1.49886 1.25020 0.95477 0.97892 0.97826 0.86675 0.79866 0.84090 0.78827 1.19640 1.20223 1.19452 1.19438 0.79290 0.96603 1.47764 0.86391 1.42195 1.07414 1.06015 1.67621 1.19464 0.87493 0.84449 0.83388 1.90547 1.69265 1.31169 1.53015 1.22299 0.95467 0.92885 0.94717 0.89239 1.23009 0.96423 1.00215 0.98092 1.22190 0.99728 0.96500 0.98392 1.21826 0.90398 0.87565 0.92190 1.41189 1.40660 1.19899 1.37291 1.73009 1.12494 1.11761 1.29887 0.91714 0.79764 0.89808 0.89661 0.89362 0.89940 0.76620 0.76809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 13.96 55.50 0.77 -25.76 15 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 15 3 Si 0.88 19.89 27.74 -169.99 -4.72 15.18 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.27 -5.59 6.51 56.52 0.37 -5.22 15 7 C -0.30 -8.93 10.16 -14.93 -0.15 -9.08 15 8 H 0.12 3.98 7.39 -52.49 -0.39 3.59 15 9 N -0.59 -15.01 5.09 -10.96 -0.06 -15.06 15 10 C 0.47 11.72 6.97 -10.98 -0.08 11.64 15 11 O -0.56 -16.69 16.16 5.55 0.09 -16.60 15 12 C 0.06 1.19 3.95 -68.09 -0.27 0.92 15 13 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 14 C -0.14 -2.05 6.76 -24.93 -0.17 -2.21 15 15 C -0.13 -1.48 6.89 -26.67 -0.18 -1.67 15 16 C 0.36 5.30 8.37 -154.78 -1.30 4.00 15 17 N -0.84 -8.70 8.99 32.88 0.30 -8.40 15 18 N -0.55 -10.65 10.70 -51.55 -0.55 -11.20 15 19 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 20 H 0.37 8.18 5.76 -40.82 -0.24 7.94 15 21 H 0.08 1.38 7.90 -51.93 -0.41 0.97 15 22 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.40 4.11 8.95 -40.82 -0.37 3.74 15 26 H 0.40 2.65 8.95 -40.82 -0.37 2.28 15 LS Contribution 231.79 15.07 3.49 3.49 Total: -1.00 -36.57 231.79 -5.53 -42.10 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -2.62 Total: 11.59 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.24 Total: 4.65 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.46 Total: -60.43 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.09 Total: -16.60 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.72 Total: 15.18 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -36.57 -5.53 -42.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003599624.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.040 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds