Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.26907 * 39.37146 * 12 10 9 14 14 C 1.54643 * 110.30409 * 277.18295 * 12 10 9 15 15 C 1.54779 * 100.99280 * 216.84587 * 14 12 10 16 16 C 1.51268 * 103.86478 * 23.80180 * 15 14 12 17 17 N 1.36996 * 124.49233 * 163.94302 * 16 15 14 18 18 N 1.28714 * 111.01249 * 343.95995 * 16 15 14 19 19 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 21 21 H 1.08997 * 111.11835 * 334.78396 * 14 12 10 22 22 H 1.09003 * 111.11607 * 98.91508 * 14 12 10 23 23 H 1.09003 * 110.54891 * 265.20427 * 15 14 12 24 24 H 1.09002 * 110.55131 * 142.39689 * 15 14 12 25 25 H 0.96999 * 120.00141 * 180.02562 * 17 16 15 26 26 H 0.97006 * 120.00314 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 1 5.9353 -1.5784 0.6675 14 6 6.1039 -2.1931 -1.4176 15 6 7.3465 -3.1151 -1.3795 16 6 7.0337 -4.0993 -0.2741 17 7 7.6911 -5.2860 -0.0830 18 7 6.0678 -3.6741 0.4628 19 1 -0.4850 0.8401 -0.0004 20 1 3.8648 -0.3633 0.0059 21 1 5.3808 -2.5389 -2.1563 22 1 6.3888 -1.1577 -1.6047 23 1 8.2414 -2.5413 -1.1389 24 1 7.4675 -3.6337 -2.3305 25 1 7.4359 -5.8694 0.6487 26 1 8.4113 -5.5431 -0.6798 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003599624.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = -41.334988 kcal Electronic energy + Delta-G solvation = -12229.384641 eV Core-core repulsion = 9920.869387 eV Total energy + Delta-G solvation = -2308.515253 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.98418 -39.19503 -36.01332 -34.88839 -33.72605 -30.86998 -29.34090 -26.48387 -23.20672 -21.42139 -20.82819 -19.77098 -18.06710 -17.66639 -16.84033 -16.63792 -15.78602 -15.49534 -15.22949 -14.71792 -14.09782 -13.96259 -13.59235 -13.04390 -12.83077 -12.61878 -12.42267 -11.97551 -11.64464 -11.52166 -10.51051 -10.26880 -10.16033 -9.14424 -8.42540 -6.04111 1.29996 1.35324 1.44967 1.68411 1.91975 2.23086 2.70010 2.98857 3.12413 3.43102 3.75249 4.02354 4.24713 4.48388 4.69767 4.81907 4.94128 5.03034 5.13917 5.54095 5.91640 6.38923 6.59368 6.66337 6.86341 7.37413 7.49505 7.96434 8.75548 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.066646 B = 0.009085 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.027230 B = 3081.228216 C = 3353.307795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.967 3.033 4 H -0.250 1.250 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.333 4.333 8 H 0.050 0.950 9 N -0.587 5.587 10 C 0.460 3.540 11 O -0.621 6.621 12 C 0.068 3.932 13 H 0.109 0.891 14 C -0.136 4.136 15 C -0.115 4.115 16 C 0.374 3.626 17 N -0.822 5.822 18 N -0.624 5.624 19 H 0.280 0.720 20 H 0.390 0.610 21 H 0.057 0.943 22 H 0.122 0.878 23 H 0.128 0.872 24 H 0.109 0.891 25 H 0.405 0.595 26 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.103 0.087 -4.034 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.787 3.213 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.157 1.157 7 C -0.462 4.462 8 H 0.068 0.932 9 N -0.229 5.229 10 C 0.248 3.752 11 O -0.505 6.505 12 C -0.047 4.047 13 H 0.127 0.873 14 C -0.176 4.176 15 C -0.156 4.156 16 C 0.091 3.909 17 N -0.372 5.372 18 N -0.353 5.353 19 H 0.090 0.910 20 H 0.226 0.774 21 H 0.076 0.924 22 H 0.140 0.860 23 H 0.146 0.854 24 H 0.127 0.873 25 H 0.235 0.765 26 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 19.882 -0.613 -3.280 20.160 hybrid contribution -0.150 0.694 -0.352 0.793 sum 19.732 0.082 -3.632 20.064 Atomic orbital electron populations 1.69811 1.08186 1.29372 1.50132 1.26161 0.96526 1.02795 0.95802 0.85335 0.79369 0.76332 0.80312 1.17405 1.19747 1.15710 1.19006 0.81479 0.94930 1.50787 0.93221 1.41995 1.05763 1.07324 1.67790 1.20850 0.90507 0.83209 0.80680 1.90497 1.71444 1.33378 1.55210 1.22182 0.90157 0.94201 0.98160 0.87294 1.23075 0.97023 1.03239 0.94213 1.22237 0.99382 0.95489 0.98443 1.22345 0.88771 0.88240 0.91553 1.41285 1.40238 1.18380 1.37305 1.72979 1.16212 1.12997 1.33140 0.91018 0.77425 0.92390 0.85997 0.85447 0.87251 0.76526 0.74339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.96 21.66 0.30 -57.71 15 2 C -0.01 -0.83 5.50 84.93 0.47 -0.36 15 3 Si 0.97 39.89 27.74 68.60 1.90 41.80 15 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 15 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 6 H -0.23 -8.25 6.51 99.48 0.65 -7.61 15 7 C -0.33 -20.69 10.16 84.04 0.85 -19.84 15 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 15 9 N -0.59 -30.16 5.09 -306.97 -1.56 -31.72 15 10 C 0.46 23.74 6.97 87.66 0.61 24.36 15 11 O -0.62 -39.40 16.16 -3.07 -0.05 -39.45 15 12 C 0.07 2.55 3.95 44.76 0.18 2.72 15 13 H 0.11 3.50 8.14 -2.39 -0.02 3.48 15 14 C -0.14 -3.62 6.76 31.76 0.21 -3.40 15 15 C -0.11 -2.15 6.89 30.64 0.21 -1.93 15 16 C 0.37 9.88 8.37 138.18 1.16 11.03 15 17 N -0.82 -14.63 8.99 -49.90 -0.45 -15.08 15 18 N -0.62 -23.84 10.70 -317.02 -3.39 -27.23 15 19 H 0.28 15.78 8.31 -92.70 -0.77 15.01 15 20 H 0.39 16.49 5.76 -92.71 -0.53 15.96 15 21 H 0.06 1.83 7.90 -2.39 -0.02 1.81 15 22 H 0.12 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.13 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.11 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.41 7.46 8.95 -92.71 -0.83 6.63 15 26 H 0.42 3.92 8.95 -92.70 -0.83 3.09 15 Total: -1.00 -88.09 231.79 -0.58 -88.66 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -1.02 Total: 28.16 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 3.69 Total: 12.58 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -5.10 Total: -131.74 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.05 Total: -39.45 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.80 kcal Total: -88.09 -0.58 -88.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003599624.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.329 kcal (2) G-P(sol) polarization free energy of solvation -88.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds