Wall clock time and date at job start Mon Mar 30 2020 01:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34095 * 126.10848 * 2 1 4 4 O 1.35106 * 107.28102 * 179.77928 * 3 2 1 5 5 C 1.34213 * 107.74738 * 0.39476 * 4 3 2 6 6 N 1.38166 * 125.71008 * 179.87474 * 5 4 3 7 7 N 1.36595 * 119.99738 * 179.68696 * 6 5 4 8 8 C 1.46499 * 119.99929 * 359.68154 * 6 5 4 9 9 C 1.50701 * 109.46992 * 90.00272 * 8 6 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 N 1.31042 * 108.57525 * 359.60096 * 5 4 3 18 18 H 1.09003 * 109.47329 * 269.99842 * 1 2 3 19 19 H 1.09009 * 109.47190 * 29.99958 * 1 2 3 20 20 H 1.09002 * 109.47657 * 149.99740 * 1 2 3 21 21 H 1.08001 * 126.35218 * 0.05009 * 3 2 1 22 22 H 1.00900 * 111.00322 * 359.97438 * 7 6 5 23 23 H 1.00898 * 111.00210 * 123.94805 * 7 6 5 24 24 H 1.09002 * 109.47391 * 330.00263 * 8 6 5 25 25 H 1.09001 * 109.46813 * 210.00319 * 8 6 5 26 26 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2971 1.0834 0.0000 4 8 3.5759 0.6474 0.0050 5 6 3.5506 -0.6945 -0.0009 6 7 4.6571 -1.5220 -0.0009 7 7 4.4956 -2.8783 -0.0008 8 6 6.0035 -0.9446 -0.0013 9 6 6.4655 -0.7464 1.4195 10 1 5.8208 -1.0233 2.2405 11 6 7.7116 -0.2126 1.6711 12 7 8.4968 0.1241 0.6713 13 14 8.2844 0.0323 3.4321 14 1 8.3072 -1.2773 4.1319 15 1 9.6492 0.6177 3.4318 16 1 7.3521 0.9517 4.1327 17 7 2.3009 -1.0885 -0.0006 18 1 -0.3634 0.0000 1.0277 19 1 -0.3634 0.8901 -0.5139 20 1 -0.3634 -0.8899 -0.5139 21 1 1.9717 2.1132 0.0008 22 1 3.5175 -3.1260 -0.0002 23 1 4.9751 -3.2997 -0.7822 24 1 5.9867 0.0165 -0.5152 25 1 6.6881 -1.6194 -0.5152 26 1 9.3733 0.5000 0.8484 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029417136.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:41 Heat of formation + Delta-G solvation = 32.559443 kcal Electronic energy + Delta-G solvation = -12321.603534 eV Core-core repulsion = 10016.292584 eV Total energy + Delta-G solvation = -2305.310950 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.95800 -38.73334 -35.95251 -34.97927 -32.10422 -31.37077 -28.71330 -27.11866 -24.97010 -22.46372 -21.70101 -19.14730 -18.83032 -17.57544 -17.34689 -17.08304 -16.33914 -15.58416 -14.83331 -14.56717 -14.04429 -13.88439 -13.53635 -13.23757 -12.85228 -12.69103 -12.65989 -12.19526 -11.77121 -11.42468 -11.32622 -10.67637 -10.06200 -8.42857 -7.99971 -6.39925 0.80736 1.12661 1.39669 1.41763 1.50659 1.87583 2.37278 2.58776 3.03464 3.40224 4.03146 4.26774 4.58327 4.86313 4.90211 4.98069 5.00469 5.05815 5.21006 5.46666 5.58591 5.68321 5.96389 6.35782 6.67018 6.80804 7.25596 7.37680 8.80558 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.048642 B = 0.009648 C = 0.008981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.500555 B = 2901.603001 C = 3116.849532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.002 3.998 3 C -0.142 4.142 4 O -0.243 6.243 5 C 0.437 3.563 6 N -0.418 5.418 7 N -0.571 5.571 8 C 0.287 3.713 9 C -0.546 4.546 10 H 0.048 0.952 11 C 0.017 3.983 12 N -0.924 5.924 13 Si 0.967 3.033 14 H -0.269 1.269 15 H -0.274 1.274 16 H -0.275 1.275 17 N -0.579 5.579 18 H 0.082 0.918 19 H 0.101 0.899 20 H 0.072 0.928 21 H 0.246 0.754 22 H 0.367 0.633 23 H 0.347 0.653 24 H 0.018 0.982 25 H 0.039 0.961 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.645 0.409 -1.985 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 C -0.212 4.212 4 O -0.129 6.129 5 C 0.138 3.862 6 N -0.232 5.232 7 N -0.199 5.199 8 C 0.166 3.834 9 C -0.584 4.584 10 H 0.066 0.934 11 C -0.183 4.183 12 N -0.563 5.563 13 Si 0.792 3.208 14 H -0.194 1.194 15 H -0.199 1.199 16 H -0.200 1.200 17 N -0.324 5.324 18 H 0.101 0.899 19 H 0.119 0.881 20 H 0.091 0.909 21 H 0.262 0.738 22 H 0.183 0.817 23 H 0.162 0.838 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.102 -0.105 -1.352 11.184 hybrid contribution 0.406 0.858 -0.198 0.970 sum -10.696 0.753 -1.549 10.834 Atomic orbital electron populations 1.20179 0.83602 1.04305 1.03632 1.22198 0.99352 0.87403 1.02732 1.25062 0.78093 1.02182 1.15858 1.84503 1.32897 1.21555 1.73958 1.22152 0.88525 0.79110 0.96400 1.44887 1.01900 0.98548 1.77901 1.60462 1.20544 0.90033 1.48838 1.19008 0.74803 0.92583 0.96962 1.21606 1.01502 1.42528 0.92791 0.93361 1.25741 0.96141 0.94475 1.01956 1.69998 1.10314 1.43125 1.32877 0.85469 0.77429 0.78703 0.79221 1.19357 1.19912 1.20039 1.70562 0.97509 1.31542 1.32787 0.89906 0.88062 0.90880 0.73838 0.81693 0.83757 0.96413 0.94278 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.27 10.42 71.23 0.74 -0.53 15 2 C 0.00 0.06 7.10 41.17 0.29 0.35 15 3 C -0.14 -4.79 12.07 66.88 0.81 -3.98 15 4 O -0.24 -10.96 10.23 -9.71 -0.10 -11.06 15 5 C 0.44 19.90 8.56 179.08 1.53 21.44 15 6 N -0.42 -19.43 3.47 -465.20 -1.61 -21.04 15 7 N -0.57 -22.14 10.31 37.02 0.38 -21.76 15 8 C 0.29 15.23 5.58 85.63 0.48 15.71 15 9 C -0.55 -31.48 9.39 25.60 0.24 -31.24 15 10 H 0.05 2.88 7.81 -2.91 -0.02 2.86 15 11 C 0.02 0.94 5.46 84.66 0.46 1.40 15 12 N -0.92 -53.73 13.29 21.45 0.28 -53.45 15 13 Si 0.97 44.51 29.54 68.60 2.03 46.54 15 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 17 N -0.58 -23.43 10.38 -301.94 -3.13 -26.56 15 18 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 19 H 0.10 1.50 8.14 -2.38 -0.02 1.48 15 20 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.25 5.59 8.06 -2.91 -0.02 5.57 15 22 H 0.37 12.97 7.91 -210.56 -1.67 11.31 15 23 H 0.35 11.46 9.18 -210.56 -1.93 9.53 15 24 H 0.02 1.02 7.71 -2.39 -0.02 1.00 15 25 H 0.04 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 Total: -1.00 -67.79 238.67 0.01 -67.78 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -2.39 Total: 16.41 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.56 Total: 3.15 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -4.08 Total: -122.81 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.10 Total: -11.06 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.79 0.01 -67.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029417136.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.338 kcal (2) G-P(sol) polarization free energy of solvation -67.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds