Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48502 * 109.46979 * 274.97658 * 3 2 1 5 5 H 1.48497 * 109.47204 * 34.97233 * 3 2 1 6 6 H 1.48497 * 109.47452 * 154.97743 * 3 2 1 7 7 C 1.38808 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00415 * 162.25025 * 7 2 1 9 9 N 1.36943 * 119.99944 * 342.24745 * 7 2 1 10 10 C 1.47844 * 122.21302 * 154.12266 * 9 7 2 11 11 H 1.09010 * 111.59524 * 2.03175 * 10 9 7 12 12 C 1.53525 * 107.45569 * 240.21851 * 10 9 7 13 13 C 1.53003 * 109.20713 * 302.65906 * 12 10 9 14 14 C 1.52995 * 109.98536 * 59.99739 * 13 12 10 15 15 C 1.47849 * 122.20819 * 334.09985 * 9 7 2 16 16 H 1.09003 * 111.60094 * 357.93653 * 15 9 7 17 17 C 1.53585 * 107.31480 * 236.21027 * 15 9 7 18 18 O 1.42917 * 109.13289 * 305.41343 * 17 15 9 19 19 C 1.42922 * 114.64046 * 61.35593 * 18 17 15 20 20 H 0.96990 * 120.00085 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.51117 * 62.57399 * 12 10 9 22 22 H 1.08997 * 109.51331 * 182.73429 * 12 10 9 23 23 H 1.08995 * 109.37951 * 299.83919 * 13 12 10 24 24 H 1.09002 * 109.37930 * 180.15735 * 13 12 10 25 25 H 1.08999 * 109.51417 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.52139 * 59.90509 * 14 13 12 27 27 H 1.08998 * 109.52950 * 185.51072 * 17 15 9 28 28 H 1.09001 * 109.52475 * 65.30719 * 17 15 9 29 29 H 1.08998 * 109.52761 * 178.73681 * 19 18 17 30 30 H 1.09000 * 109.59086 * 58.55236 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5041 2.6200 0.8025 6 1 3.5964 1.4122 0.5922 7 6 2.0103 -1.2021 0.0005 8 1 3.0518 -1.2245 -0.2846 9 7 1.3746 -2.3597 0.3627 10 6 1.8160 -3.6855 -0.1202 11 1 2.7040 -3.6087 -0.7478 12 6 0.6466 -4.3051 -0.8982 13 6 -0.5792 -4.3844 0.0141 14 6 -0.9707 -2.9830 0.4869 15 6 0.2016 -2.3662 1.2627 16 1 -0.0450 -1.3620 1.6077 17 6 0.5386 -3.2855 2.4460 18 8 0.9289 -4.5667 1.9475 19 6 2.0915 -4.5538 1.1163 20 1 -0.4850 0.8400 -0.0004 21 1 0.4162 -3.6847 -1.7644 22 1 0.9197 -5.3070 -1.2292 23 1 -0.3469 -5.0062 0.8787 24 1 -1.4106 -4.8266 -0.5348 25 1 -1.8438 -3.0485 1.1361 26 1 -1.2045 -2.3595 -0.3762 27 1 -0.3384 -3.3944 3.0840 28 1 1.3574 -2.8535 3.0213 29 1 2.3264 -5.5708 0.8025 30 1 2.9333 -4.1403 1.6718 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039082312.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = -31.544670 kcal Electronic energy + Delta-G solvation = -13764.761877 eV Core-core repulsion = 11560.211507 eV Total energy + Delta-G solvation = -2204.550370 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11227 -36.47145 -34.65199 -33.33165 -32.09473 -28.23483 -27.08843 -25.20026 -22.94101 -22.78037 -20.08146 -18.73037 -17.16391 -16.61600 -16.19479 -16.11156 -15.31887 -15.11161 -14.38514 -14.03835 -13.82808 -13.11731 -13.03704 -12.79206 -12.51507 -12.50311 -12.23644 -12.12897 -11.76711 -11.62058 -11.03525 -10.89523 -10.45669 -9.89007 -8.51306 -7.82988 -5.26932 1.44948 1.47138 1.56383 2.50057 3.07129 3.28559 3.53248 4.22518 4.26439 4.30085 4.42410 4.45195 4.70486 4.74858 4.77210 4.87673 4.93851 5.01863 5.20585 5.26841 5.38774 5.43443 5.54449 5.65651 5.77583 5.99122 6.34787 6.44118 7.13963 7.82490 8.43076 9.20661 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049228 B = 0.014256 C = 0.013749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.642916 B = 1963.575337 C = 2035.953081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.049 4.049 3 Si 0.963 3.037 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.603 5.603 10 C 0.118 3.882 11 H 0.073 0.927 12 C -0.116 4.116 13 C -0.132 4.132 14 C -0.106 4.106 15 C 0.152 3.848 16 H 0.075 0.925 17 C 0.053 3.947 18 O -0.380 6.380 19 C 0.059 3.941 20 H 0.247 0.753 21 H 0.022 0.978 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.026 0.974 27 H 0.103 0.897 28 H 0.036 0.964 29 H 0.117 0.883 30 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 -7.975 2.787 8.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.327 5.327 10 C 0.012 3.988 11 H 0.091 0.909 12 C -0.155 4.155 13 C -0.169 4.169 14 C -0.145 4.145 15 C 0.045 3.955 16 H 0.093 0.907 17 C -0.025 4.025 18 O -0.299 6.299 19 C -0.019 4.019 20 H 0.057 0.943 21 H 0.040 0.960 22 H 0.094 0.906 23 H 0.130 0.870 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.135 0.865 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.410 -7.982 2.819 8.582 hybrid contribution 0.286 1.667 -0.478 1.758 sum 1.696 -6.314 2.341 6.945 Atomic orbital electron populations 1.70162 1.06285 1.25393 1.55148 1.25674 0.96054 1.01013 1.01767 0.85325 0.78216 0.80121 0.77137 1.21698 1.21908 1.19704 1.19431 0.92915 0.86033 1.40429 0.91776 1.44794 1.33960 1.01197 1.52712 1.21864 0.96196 0.86086 0.94676 0.90905 1.21883 0.96908 0.99304 0.97415 1.21999 0.96258 0.97409 1.01190 1.21691 0.97378 0.96263 0.99167 1.21413 0.86859 0.97691 0.89488 0.90721 1.23141 0.99337 0.84338 0.95654 1.87635 1.45619 1.29539 1.67092 1.23056 0.86932 1.00842 0.91089 0.94334 0.95952 0.90634 0.87035 0.94118 0.93325 0.95496 0.87936 0.94603 0.86538 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 10.76 21.65 0.23 -53.70 16 2 C -0.05 -2.75 5.04 84.86 0.43 -2.32 16 3 Si 0.96 45.02 29.59 68.60 2.03 47.05 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.26 -14.20 9.81 84.03 0.82 -13.37 16 8 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 9 N -0.60 -30.00 2.56 -643.79 -1.65 -31.64 16 10 C 0.12 4.81 3.73 45.11 0.17 4.98 16 11 H 0.07 2.91 8.06 -2.38 -0.02 2.89 16 12 C -0.12 -4.46 5.61 30.77 0.17 -4.29 16 13 C -0.13 -5.02 5.53 30.59 0.17 -4.85 16 14 C -0.11 -4.72 5.54 30.77 0.17 -4.55 16 15 C 0.15 7.15 2.72 45.10 0.12 7.27 16 16 H 0.07 4.06 6.00 -2.39 -0.01 4.04 16 17 C 0.05 2.05 6.34 72.18 0.46 2.50 16 18 O -0.38 -13.68 7.37 -148.98 -1.10 -14.78 16 19 C 0.06 1.99 6.34 72.18 0.46 2.45 16 20 H 0.25 14.09 8.31 -92.72 -0.77 13.32 16 21 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.11 4.04 4.84 -26.06 -0.13 3.91 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.03 1.40 7.85 -2.38 -0.02 1.38 16 27 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -61.18 230.34 3.48 -57.70 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.99 Total: 7.56 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 2.97 Total: -12.19 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.41 Total: -85.34 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.10 Total: -14.78 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -61.18 3.48 -57.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039082312.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.156 kcal (2) G-P(sol) polarization free energy of solvation -61.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds