Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00106 * 2 1 4 4 H 1.48494 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46686 * 300.00102 * 3 2 1 6 6 H 1.48499 * 109.47225 * 59.99790 * 3 2 1 7 7 C 1.37878 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47345 * 184.85373 * 9 7 2 11 11 C 1.46903 * 110.99590 * 285.60113 * 10 9 7 12 12 C 1.52998 * 109.46765 * 169.99673 * 11 10 9 13 13 H 1.09004 * 115.74596 * 33.01395 * 12 11 10 14 14 C 1.53003 * 117.77264 * 179.97438 * 12 11 10 15 15 O 1.42897 * 117.77914 * 246.01711 * 12 11 10 16 16 C 1.46891 * 111.00005 * 161.64800 * 10 9 7 17 17 C 1.52998 * 117.49898 * 10.27085 * 16 10 9 18 18 C 1.52996 * 117.50212 * 301.64766 * 16 10 9 19 19 H 0.96997 * 120.00085 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46984 * 64.84644 * 9 7 2 21 21 H 1.09001 * 109.46818 * 304.85379 * 9 7 2 22 22 H 1.08998 * 109.47306 * 50.00182 * 11 10 9 23 23 H 1.08995 * 109.47424 * 290.00162 * 11 10 9 24 24 H 1.09000 * 117.77608 * 213.68892 * 14 12 11 25 25 H 1.08998 * 117.77273 * 359.94631 * 14 12 11 26 26 H 1.09004 * 115.55237 * 155.97676 * 16 10 9 27 27 H 1.08999 * 117.50489 * 359.97438 * 17 16 10 28 28 H 1.09007 * 117.49993 * 145.02299 * 17 16 10 29 29 H 1.09000 * 117.50498 * 214.98056 * 18 16 10 30 30 H 1.09005 * 117.49670 * 359.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2013 -3.6132 0.1183 11 6 2.9191 -3.8287 -1.1452 12 6 4.0644 -4.8176 -0.9188 13 1 3.8822 -5.5900 -0.1715 14 6 4.9410 -5.1801 -2.1192 15 8 5.4009 -4.3332 -1.0635 16 6 1.5221 -4.8407 0.5539 17 6 -0.0078 -4.8339 0.5696 18 6 0.7709 -4.7978 1.8860 19 1 -0.4850 0.8400 0.0004 20 1 0.6915 -2.5957 -0.9299 21 1 0.5605 -2.5200 0.8436 22 1 3.3227 -2.8804 -1.5000 23 1 2.2322 -4.2322 -1.8890 24 1 5.3410 -6.1929 -2.1687 25 1 4.7065 -4.7170 -3.0777 26 1 2.0188 -5.7733 0.2860 27 1 -0.5104 -3.9186 0.2572 28 1 -0.5179 -5.7622 0.3119 29 1 0.7732 -5.7022 2.4945 30 1 0.7811 -3.8589 2.4396 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531028.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = 27.564264 kcal Electronic energy + Delta-G solvation = -12607.000465 eV Core-core repulsion = 10405.013251 eV Total energy + Delta-G solvation = -2201.987214 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98001 -37.94694 -33.57133 -32.28602 -28.48849 -26.26568 -24.64944 -22.71099 -21.71159 -21.34363 -18.87840 -16.88652 -16.32748 -15.47089 -14.98339 -14.78330 -14.33419 -13.65815 -13.13779 -12.82708 -12.22031 -11.92448 -11.24859 -11.06821 -10.92298 -10.74497 -10.65059 -10.30719 -10.08704 -10.01621 -9.80839 -9.54348 -9.12699 -8.43249 -7.17107 -6.03682 -4.04701 3.31786 3.39324 3.46131 3.70415 4.38412 4.45435 4.49546 4.88693 5.01136 5.23638 5.32244 5.47990 5.52150 5.55323 5.66732 5.84671 5.86969 6.15570 6.16387 6.21488 6.58098 6.60111 6.77238 7.21406 7.24921 7.80197 8.06207 8.13433 8.50128 9.03620 9.59762 11.06841 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.012163 C = 0.008932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.589009 B = 2301.506459 C = 3133.898902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.189 3.811 10 N -0.502 5.502 11 C 0.074 3.926 12 C 0.011 3.989 13 H 0.120 0.880 14 C -0.052 4.052 15 O -0.355 6.355 16 C 0.020 3.980 17 C -0.224 4.224 18 C -0.174 4.174 19 H 0.261 0.739 20 H -0.007 1.007 21 H 0.043 0.957 22 H 0.094 0.906 23 H 0.045 0.955 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -10.532 -2.380 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.065 3.935 10 N -0.224 5.224 11 C -0.055 4.055 12 C -0.047 4.047 13 H 0.137 0.863 14 C -0.128 4.128 15 O -0.275 6.275 16 C -0.090 4.090 17 C -0.264 4.264 18 C -0.212 4.212 19 H 0.070 0.930 20 H 0.011 0.989 21 H 0.061 0.939 22 H 0.112 0.888 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.448 -10.049 -1.891 10.791 hybrid contribution -0.141 0.759 -0.484 0.911 sum 3.306 -9.289 -2.374 10.142 Atomic orbital electron populations 1.69955 1.06016 1.26713 1.51184 1.24968 0.94867 0.99300 0.95397 0.86451 0.80243 0.83355 0.77492 1.19578 1.21100 1.20987 1.21234 0.93687 0.89881 1.49807 0.91803 1.19882 0.90390 0.86921 0.96322 1.61983 1.29046 1.03320 1.28068 1.21870 0.93000 0.98890 0.91711 1.23949 0.83295 0.98964 0.98467 0.86275 1.24265 1.01779 0.96763 0.90031 1.91699 1.28065 1.66712 1.40998 1.22675 0.90715 0.94704 1.00944 1.23587 0.96690 1.03245 1.02832 1.22988 1.04474 1.02803 0.90956 0.92967 0.98877 0.93939 0.88754 0.93734 0.87821 0.87547 0.87752 0.87448 0.90017 0.89547 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.43 8.58 -34.44 -0.30 -14.72 16 8 H 0.06 1.85 7.57 -52.48 -0.40 1.45 16 9 C 0.19 4.86 3.38 -4.98 -0.02 4.84 16 10 N -0.50 -10.84 4.65 -228.09 -1.06 -11.90 16 11 C 0.07 1.40 5.20 -3.82 -0.02 1.38 16 12 C 0.01 0.17 6.44 -26.73 -0.17 0.00 16 13 H 0.12 1.73 6.65 -51.93 -0.35 1.39 16 14 C -0.05 -0.68 11.42 37.16 0.42 -0.25 16 15 O -0.35 -6.58 14.48 -35.23 -0.51 -7.09 16 16 C 0.02 0.35 5.73 -67.72 -0.39 -0.04 16 17 C -0.22 -3.90 9.56 -26.73 -0.26 -4.15 16 18 C -0.17 -2.99 9.91 -26.73 -0.27 -3.26 16 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 20 H -0.01 -0.18 7.83 -51.93 -0.41 -0.58 16 21 H 0.04 1.16 5.63 -51.93 -0.29 0.87 16 22 H 0.09 2.04 7.20 -51.93 -0.37 1.66 16 23 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 24 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.10 1.56 6.57 -51.93 -0.34 1.21 16 27 H 0.11 2.18 6.01 -51.93 -0.31 1.87 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.93 7.48 -51.93 -0.39 1.54 16 LS Contribution 252.90 15.07 3.81 3.81 Total: -1.00 -30.99 252.90 -7.24 -38.22 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.11 Total: 0.52 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.09 Total: -14.71 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.32 Total: -37.75 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.51 Total: -7.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.99 -7.24 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531028.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.787 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds