Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00106 * 2 1 4 4 H 1.48494 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46686 * 300.00102 * 3 2 1 6 6 H 1.48499 * 109.47225 * 59.99790 * 3 2 1 7 7 C 1.37878 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47345 * 184.85373 * 9 7 2 11 11 C 1.46903 * 110.99590 * 285.60113 * 10 9 7 12 12 C 1.52998 * 109.46765 * 169.99673 * 11 10 9 13 13 H 1.09004 * 115.74596 * 33.01395 * 12 11 10 14 14 C 1.53003 * 117.77264 * 179.97438 * 12 11 10 15 15 O 1.42897 * 117.77914 * 246.01711 * 12 11 10 16 16 C 1.46891 * 111.00005 * 161.64800 * 10 9 7 17 17 C 1.52998 * 117.49898 * 10.27085 * 16 10 9 18 18 C 1.52996 * 117.50212 * 301.64766 * 16 10 9 19 19 H 0.96997 * 120.00085 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46984 * 64.84644 * 9 7 2 21 21 H 1.09001 * 109.46818 * 304.85379 * 9 7 2 22 22 H 1.08998 * 109.47306 * 50.00182 * 11 10 9 23 23 H 1.08995 * 109.47424 * 290.00162 * 11 10 9 24 24 H 1.09000 * 117.77608 * 213.68892 * 14 12 11 25 25 H 1.08998 * 117.77273 * 359.94631 * 14 12 11 26 26 H 1.09004 * 115.55237 * 155.97676 * 16 10 9 27 27 H 1.08999 * 117.50489 * 359.97438 * 17 16 10 28 28 H 1.09007 * 117.49993 * 145.02299 * 17 16 10 29 29 H 1.09000 * 117.50498 * 214.98056 * 18 16 10 30 30 H 1.09005 * 117.49670 * 359.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2013 -3.6132 0.1183 11 6 2.9191 -3.8287 -1.1452 12 6 4.0644 -4.8176 -0.9188 13 1 3.8822 -5.5900 -0.1715 14 6 4.9410 -5.1801 -2.1192 15 8 5.4009 -4.3332 -1.0635 16 6 1.5221 -4.8407 0.5539 17 6 -0.0078 -4.8339 0.5696 18 6 0.7709 -4.7978 1.8860 19 1 -0.4850 0.8400 0.0004 20 1 0.6915 -2.5957 -0.9299 21 1 0.5605 -2.5200 0.8436 22 1 3.3227 -2.8804 -1.5000 23 1 2.2322 -4.2322 -1.8890 24 1 5.3410 -6.1929 -2.1687 25 1 4.7065 -4.7170 -3.0777 26 1 2.0188 -5.7733 0.2860 27 1 -0.5104 -3.9186 0.2572 28 1 -0.5179 -5.7622 0.3119 29 1 0.7732 -5.7022 2.4945 30 1 0.7811 -3.8589 2.4396 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531028.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = 4.708354 kcal Electronic energy + Delta-G solvation = -12607.991571 eV Core-core repulsion = 10405.013251 eV Total energy + Delta-G solvation = -2202.978321 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.25138 -39.48154 -35.38043 -34.20490 -30.26984 -27.97332 -26.01904 -24.53949 -23.12195 -22.69985 -20.45196 -18.79704 -17.77115 -17.04094 -16.66215 -16.25717 -15.93277 -15.11998 -14.75224 -14.45365 -14.06723 -13.55131 -13.13797 -12.78340 -12.61311 -12.35009 -12.30086 -11.97895 -11.81687 -11.33820 -11.16341 -11.13423 -11.02206 -10.62844 -8.84936 -8.23688 -6.33638 1.36024 1.37067 1.51036 2.35813 2.49996 2.99550 3.07768 3.28597 3.42704 3.87632 4.01151 4.10586 4.18408 4.27569 4.32202 4.67841 4.73806 4.78136 4.81441 4.83421 5.07987 5.12667 5.20048 5.29400 5.35867 5.61689 6.04167 6.32705 6.61838 6.81851 7.35716 8.86262 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.012163 C = 0.008932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.589009 B = 2301.506459 C = 3133.898902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.210 3.790 10 N -0.521 5.521 11 C 0.076 3.924 12 C 0.001 3.999 13 H 0.141 0.859 14 C -0.023 4.023 15 O -0.403 6.403 16 C 0.013 3.987 17 C -0.221 4.221 18 C -0.171 4.171 19 H 0.265 0.735 20 H -0.032 1.032 21 H 0.019 0.981 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.145 0.855 25 H 0.118 0.882 26 H 0.146 0.854 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -12.162 -2.727 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.069 0.931 9 C 0.085 3.915 10 N -0.243 5.243 11 C -0.052 4.052 12 C -0.055 4.055 13 H 0.159 0.841 14 C -0.098 4.098 15 O -0.324 6.324 16 C -0.097 4.097 17 C -0.260 4.260 18 C -0.209 4.209 19 H 0.074 0.926 20 H -0.014 1.014 21 H 0.037 0.963 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.162 0.838 25 H 0.136 0.864 26 H 0.163 0.837 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.379 -11.696 -2.244 12.689 hybrid contribution -0.441 1.223 -0.411 1.363 sum 3.938 -10.473 -2.655 11.500 Atomic orbital electron populations 1.70060 1.07398 1.27843 1.51676 1.25819 0.95764 1.02858 0.94797 0.85414 0.78709 0.78968 0.78028 1.19550 1.19938 1.20109 1.21506 0.93253 0.91697 1.50137 0.93104 1.19422 0.90221 0.88015 0.93868 1.61834 1.28577 1.04190 1.29711 1.21806 0.94177 0.98273 0.90933 1.23842 0.81495 0.98481 1.01728 0.84148 1.24816 0.98025 0.97921 0.89059 1.91671 1.28990 1.68222 1.43508 1.22951 0.91031 0.94393 1.01290 1.23506 0.96365 1.03086 1.03043 1.23040 1.03987 1.02946 0.90920 0.92579 1.01434 0.96304 0.92452 0.92284 0.83762 0.86385 0.83655 0.91426 0.86355 0.85536 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.53 -31.15 8.58 25.60 0.22 -30.93 16 8 H 0.05 3.06 7.57 -2.91 -0.02 3.04 16 9 C 0.21 11.31 3.38 85.56 0.29 11.60 16 10 N -0.52 -22.78 4.65 -875.55 -4.07 -26.85 16 11 C 0.08 2.90 5.20 86.30 0.45 3.35 16 12 C 0.00 0.04 6.44 30.59 0.20 0.24 16 13 H 0.14 3.61 6.65 -2.39 -0.02 3.60 16 14 C -0.02 -0.52 11.42 71.98 0.82 0.30 16 15 O -0.40 -14.40 14.48 -148.98 -2.16 -16.56 16 16 C 0.01 0.43 5.73 44.92 0.26 0.68 16 17 C -0.22 -7.49 9.56 30.59 0.29 -7.20 16 18 C -0.17 -5.68 9.91 30.59 0.30 -5.37 16 19 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 20 H -0.03 -1.83 7.83 -2.39 -0.02 -1.85 16 21 H 0.02 1.09 5.63 -2.39 -0.01 1.08 16 22 H 0.06 2.57 7.20 -2.39 -0.02 2.55 16 23 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 24 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.15 3.76 6.57 -2.39 -0.02 3.74 16 27 H 0.07 2.86 6.01 -2.39 -0.01 2.84 16 28 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16 29 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.06 2.60 7.48 -2.38 -0.02 2.58 16 Total: -1.00 -69.87 252.90 0.49 -69.38 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.12 Total: 8.76 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 3.29 Total: -26.52 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.79 Total: -82.99 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -2.16 Total: -16.56 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -69.87 0.49 -69.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531028.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.084 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds