Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99885 * 2 1 4 4 C 1.53002 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.50708 * 109.47166 * 180.02562 * 4 3 2 6 6 N 1.31395 * 125.15387 * 270.02779 * 5 4 3 7 7 N 1.40456 * 107.17899 * 179.72028 * 6 5 4 8 8 H 0.97002 * 127.02223 * 180.26200 * 7 6 5 9 9 C 1.37030 * 105.96540 * 0.40311 * 7 6 5 10 10 C 1.40369 * 126.31320 * 179.85726 * 9 7 6 11 11 H 1.08002 * 120.00500 * 359.71854 * 10 9 7 12 12 C 1.40270 * 119.99779 * 179.43559 * 10 9 7 13 13 N 1.30644 * 120.00022 * 0.28004 * 12 10 9 14 14 Si 1.86803 * 120.00024 * 180.27829 * 12 10 9 15 15 H 1.48490 * 109.47019 * 60.00156 * 14 12 10 16 16 H 1.48504 * 109.47032 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00123 * 14 12 10 18 18 N 1.32230 * 125.15944 * 89.99513 * 5 4 3 19 19 H 1.09007 * 109.47081 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.46692 * 299.99763 * 1 2 3 21 21 H 1.08996 * 109.46968 * 59.99941 * 1 2 3 22 22 H 1.09000 * 109.47387 * 60.00508 * 3 2 1 23 23 H 1.08997 * 109.47531 * 300.00021 * 3 2 1 24 24 H 1.08996 * 109.47839 * 60.00222 * 4 3 2 25 25 H 1.09001 * 109.47507 * 299.99551 * 4 3 2 26 26 H 0.96996 * 120.00314 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1485 2.5613 0.0000 6 7 4.4553 3.2533 -1.0740 7 7 4.9932 4.4761 -0.6400 8 1 5.3112 5.2045 -1.1961 9 6 4.9799 4.4288 0.7294 10 6 5.4280 5.4344 1.6003 11 1 5.8353 6.3519 1.2018 12 6 5.3413 5.2501 2.9881 13 7 4.8486 4.1403 3.4702 14 14 5.9305 6.5914 4.1471 15 1 5.1553 7.8337 3.9011 16 1 5.7323 6.1537 5.5523 17 1 7.3729 6.8527 3.9092 18 7 4.4585 3.2563 1.0814 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.6887 1.8463 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 3.8568 0.6439 -0.8908 25 1 3.8575 0.6435 0.8891 26 1 4.7890 4.0126 4.4299 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070584205.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = 18.518334 kcal Electronic energy + Delta-G solvation = -12059.209752 eV Core-core repulsion = 9753.289934 eV Total energy + Delta-G solvation = -2305.919818 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.73505 -37.50354 -33.72094 -32.37352 -29.71611 -29.05799 -26.31428 -25.61921 -22.83705 -20.59341 -18.73074 -17.12535 -16.16572 -15.84327 -15.48391 -14.72003 -14.69318 -13.39542 -13.30769 -12.70328 -12.22363 -11.74642 -11.58325 -11.24881 -10.93576 -10.83263 -10.75979 -10.34831 -9.93367 -9.44540 -9.29790 -8.25889 -7.83795 -7.80619 -6.61196 -4.72126 2.95119 3.07181 3.08781 3.39881 3.89000 4.03454 4.51614 4.64103 5.39607 5.47680 5.51259 5.63513 5.75648 5.82559 5.88198 6.09178 6.34642 6.59250 6.91775 7.16507 7.48417 7.62593 7.97831 8.29473 8.38910 8.73740 9.19611 10.19543 10.33254 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.047882 B = 0.008761 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.625300 B = 3195.094776 C = 3622.548426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.074 3.926 4 C -0.010 4.010 5 C 0.212 3.788 6 N -0.411 5.411 7 N -0.565 5.565 8 H 0.413 0.587 9 C 0.407 3.593 10 C -0.454 4.454 11 H 0.085 0.915 12 C 0.083 3.917 13 N -0.727 5.727 14 Si 0.918 3.082 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.265 1.265 18 N -0.556 5.556 19 H 0.081 0.919 20 H 0.039 0.961 21 H 0.037 0.963 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -1.568 -1.148 4.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.003 4.003 4 C -0.050 4.050 5 C -0.072 4.072 6 N -0.247 5.247 7 N -0.283 5.283 8 H 0.255 0.745 9 C 0.157 3.843 10 C -0.496 4.496 11 H 0.104 0.896 12 C -0.144 4.144 13 N -0.350 5.350 14 Si 0.742 3.258 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.190 1.190 18 N -0.292 5.292 19 H 0.099 0.901 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.271 -2.324 -1.343 5.044 hybrid contribution 0.344 1.578 0.281 1.639 sum -3.927 -0.746 -1.062 4.136 Atomic orbital electron populations 1.22666 0.81667 1.02070 0.99852 1.87808 1.19202 1.28938 1.95485 1.22441 0.93826 0.83508 1.00566 1.19385 0.91743 0.90569 1.03284 1.23447 0.98650 0.96469 0.88618 1.77603 1.29001 0.95723 1.22388 1.48026 1.58297 1.15599 1.06415 0.74534 1.20989 0.90355 0.92387 0.80533 1.18354 1.40240 1.00993 0.89996 0.89647 1.25825 0.93661 0.96270 0.98677 1.69972 1.28073 1.22675 1.14276 0.86232 0.80009 0.80898 0.78693 1.19000 1.20136 1.18966 1.71307 1.27072 1.04876 1.25928 0.90062 0.94211 0.94441 0.92603 0.93512 0.90663 0.89576 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 15 2 O -0.40 -6.83 10.70 -35.23 -0.38 -7.21 15 3 C 0.07 1.41 5.92 37.16 0.22 1.63 15 4 C -0.01 -0.20 6.21 -27.88 -0.17 -0.38 15 5 C 0.21 5.45 7.34 -157.16 -1.15 4.30 15 6 N -0.41 -10.61 12.80 32.36 0.41 -10.20 15 7 N -0.56 -14.19 7.58 31.10 0.24 -13.95 15 8 H 0.41 8.82 8.96 -182.32 -1.63 7.19 15 9 C 0.41 11.28 7.70 -155.87 -1.20 10.08 15 10 C -0.45 -11.93 9.47 -38.02 -0.36 -12.29 15 11 H 0.09 2.03 7.85 -52.49 -0.41 1.62 15 12 C 0.08 2.08 5.50 -17.29 -0.10 1.98 15 13 N -0.73 -19.41 11.93 55.56 0.66 -18.75 15 14 Si 0.92 18.20 29.56 -169.99 -5.03 13.18 15 15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 16 H -0.28 -5.36 7.11 56.52 0.40 -4.96 15 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 18 N -0.56 -15.87 9.40 -10.11 -0.10 -15.96 15 19 H 0.08 0.86 8.14 -51.92 -0.42 0.43 15 20 H 0.04 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.04 0.44 8.14 -51.93 -0.42 0.02 15 22 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 25 H 0.09 1.80 8.14 -51.93 -0.42 1.38 15 26 H 0.28 6.71 8.29 -40.82 -0.34 6.37 15 LS Contribution 238.55 15.07 3.59 3.59 Total: -1.00 -31.26 238.55 -6.38 -37.63 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.14 Total: 4.78 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.65 Total: 6.88 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 1.22 Total: -58.86 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.38 Total: -7.21 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.26 -6.38 -37.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584205.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.153 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds