Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99885 * 2 1 4 4 C 1.53002 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.50708 * 109.47166 * 180.02562 * 4 3 2 6 6 N 1.31395 * 125.15387 * 270.02779 * 5 4 3 7 7 N 1.40456 * 107.17899 * 179.72028 * 6 5 4 8 8 H 0.97002 * 127.02223 * 180.26200 * 7 6 5 9 9 C 1.37030 * 105.96540 * 0.40311 * 7 6 5 10 10 C 1.40369 * 126.31320 * 179.85726 * 9 7 6 11 11 H 1.08002 * 120.00500 * 359.71854 * 10 9 7 12 12 C 1.40270 * 119.99779 * 179.43559 * 10 9 7 13 13 N 1.30644 * 120.00022 * 0.28004 * 12 10 9 14 14 Si 1.86803 * 120.00024 * 180.27829 * 12 10 9 15 15 H 1.48490 * 109.47019 * 60.00156 * 14 12 10 16 16 H 1.48504 * 109.47032 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00123 * 14 12 10 18 18 N 1.32230 * 125.15944 * 89.99513 * 5 4 3 19 19 H 1.09007 * 109.47081 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.46692 * 299.99763 * 1 2 3 21 21 H 1.08996 * 109.46968 * 59.99941 * 1 2 3 22 22 H 1.09000 * 109.47387 * 60.00508 * 3 2 1 23 23 H 1.08997 * 109.47531 * 300.00021 * 3 2 1 24 24 H 1.08996 * 109.47839 * 60.00222 * 4 3 2 25 25 H 1.09001 * 109.47507 * 299.99551 * 4 3 2 26 26 H 0.96996 * 120.00314 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1485 2.5613 0.0000 6 7 4.4553 3.2533 -1.0740 7 7 4.9932 4.4761 -0.6400 8 1 5.3112 5.2045 -1.1961 9 6 4.9799 4.4288 0.7294 10 6 5.4280 5.4344 1.6003 11 1 5.8353 6.3519 1.2018 12 6 5.3413 5.2501 2.9881 13 7 4.8486 4.1403 3.4702 14 14 5.9305 6.5914 4.1471 15 1 5.1553 7.8337 3.9011 16 1 5.7323 6.1537 5.5523 17 1 7.3729 6.8527 3.9092 18 7 4.4585 3.2563 1.0814 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.6887 1.8463 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 3.8568 0.6439 -0.8908 25 1 3.8575 0.6435 0.8891 26 1 4.7890 4.0126 4.4299 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070584205.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = -3.464617 kcal Electronic energy + Delta-G solvation = -12060.163004 eV Core-core repulsion = 9753.289934 eV Total energy + Delta-G solvation = -2306.873071 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.72713 -38.85952 -35.63715 -34.14362 -31.70955 -30.88256 -27.89336 -27.20539 -24.44198 -22.58989 -20.63146 -19.09543 -17.98721 -17.31764 -16.95215 -16.42845 -16.11303 -15.17516 -15.07605 -14.16418 -14.02497 -13.54556 -13.00926 -12.78109 -12.69284 -12.40130 -12.14881 -12.05997 -11.82956 -11.26662 -10.65182 -10.25713 -9.87045 -9.86247 -8.50345 -6.74639 1.20857 1.46184 1.60407 1.64682 2.22012 2.42845 2.62441 2.95739 3.44241 3.96527 4.05361 4.19107 4.45912 4.52481 4.60210 4.63449 4.83369 4.94499 5.06958 5.27176 5.67872 6.03359 6.17234 6.30712 6.43700 6.77163 7.26147 8.20246 8.44923 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.047882 B = 0.008761 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.625300 B = 3195.094776 C = 3622.548426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.090 3.910 4 C -0.007 4.007 5 C 0.203 3.797 6 N -0.422 5.422 7 N -0.562 5.562 8 H 0.427 0.573 9 C 0.379 3.621 10 C -0.476 4.476 11 H 0.104 0.896 12 C 0.036 3.964 13 N -0.768 5.768 14 Si 1.004 2.996 15 H -0.256 1.256 16 H -0.270 1.270 17 H -0.256 1.256 18 N -0.593 5.593 19 H 0.109 0.891 20 H 0.043 0.957 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -0.955 -0.686 4.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.012 3.988 4 C -0.047 4.047 5 C -0.080 4.080 6 N -0.257 5.257 7 N -0.283 5.283 8 H 0.271 0.729 9 C 0.130 3.870 10 C -0.517 4.517 11 H 0.122 0.878 12 C -0.188 4.188 13 N -0.392 5.392 14 Si 0.823 3.177 15 H -0.180 1.180 16 H -0.194 1.194 17 H -0.180 1.180 18 N -0.330 5.330 19 H 0.127 0.873 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.405 -1.715 -0.922 4.816 hybrid contribution 0.339 1.335 0.102 1.381 sum -4.066 -0.379 -0.820 4.166 Atomic orbital electron populations 1.22974 0.79230 1.04242 1.00657 1.87778 1.21782 1.27530 1.95561 1.22097 0.92482 0.84366 0.99825 1.19461 0.93133 0.88286 1.03823 1.24176 0.98176 0.97795 0.87903 1.77519 1.29405 0.96097 1.22729 1.47948 1.58322 1.15950 1.06052 0.72876 1.21443 0.91045 0.92929 0.81611 1.18937 1.40352 1.01451 0.90963 0.87770 1.26947 0.93029 0.98804 0.99980 1.70082 1.28801 1.25047 1.15249 0.84938 0.79628 0.77210 0.75897 1.18002 1.19437 1.18045 1.71273 1.28368 1.05857 1.27485 0.87259 0.93791 0.93250 0.94232 0.93322 0.89075 0.89937 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 11.01 113.37 1.25 1.84 15 2 O -0.41 -13.54 10.70 -148.98 -1.59 -15.13 15 3 C 0.09 3.39 5.92 71.98 0.43 3.82 15 4 C -0.01 -0.30 6.21 29.85 0.19 -0.11 15 5 C 0.20 10.56 7.34 138.74 1.02 11.58 15 6 N -0.42 -21.82 12.80 -51.54 -0.66 -22.48 15 7 N -0.56 -28.34 7.58 -55.50 -0.42 -28.76 15 8 H 0.43 18.18 8.96 -213.09 -1.91 16.27 15 9 C 0.38 21.21 7.70 133.83 1.03 22.24 15 10 C -0.48 -24.86 9.47 23.28 0.22 -24.63 15 11 H 0.10 4.84 7.85 -2.91 -0.02 4.82 15 12 C 0.04 1.78 5.50 85.36 0.47 2.25 15 13 N -0.77 -41.21 11.93 21.88 0.26 -40.95 15 14 Si 1.00 36.26 29.56 68.60 2.03 38.29 15 15 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 16 H -0.27 -9.36 7.11 99.48 0.71 -8.66 15 17 H -0.26 -8.85 7.11 99.48 0.71 -8.15 15 18 N -0.59 -34.42 9.40 -185.90 -1.75 -36.17 15 19 H 0.11 2.00 8.14 -2.38 -0.02 1.98 15 20 H 0.04 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.09 3.49 8.14 -2.39 -0.02 3.47 15 25 H 0.08 3.49 8.14 -2.39 -0.02 3.47 15 26 H 0.29 13.79 8.29 -92.71 -0.77 13.02 15 Total: -1.00 -66.46 238.55 1.75 -64.71 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.72 Total: 23.51 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 4.60 Total: 16.98 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -2.57 Total: -128.37 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.59 Total: -15.13 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -66.46 1.75 -64.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584205.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.246 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds