Wall clock time and date at job start Mon Mar 30 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 N 1.46904 * 109.47486 * 295.00613 * 3 2 1 6 6 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 7 7 N 1.31127 * 126.05177 * 74.69561 * 6 3 2 8 8 N 1.28686 * 109.58660 * 179.82143 * 7 6 3 9 9 C 1.32860 * 109.00601 * 0.44559 * 8 7 6 10 10 C 1.39901 * 126.46850 * 179.70830 * 9 8 7 11 11 H 1.08002 * 120.00260 * 180.02562 * 10 9 8 12 12 C 1.40354 * 120.00136 * 0.02562 * 10 9 8 13 13 N 1.30629 * 119.99523 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00196 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46875 * 90.00010 * 14 12 10 16 16 H 1.48493 * 109.46954 * 209.99901 * 14 12 10 17 17 H 1.48495 * 109.47062 * 329.99888 * 14 12 10 18 18 O 1.34299 * 126.05953 * 255.00081 * 6 3 2 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.00908 * 110.99608 * 299.99663 * 5 3 2 25 25 H 1.00892 * 111.00070 * 63.94257 * 5 3 2 26 26 H 0.96995 * 119.99541 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6513 2.0994 -1.2552 6 6 3.5419 1.4443 0.1238 7 7 4.3947 1.1359 -0.8233 8 7 5.5959 1.2474 -0.3753 9 6 5.5497 1.6280 0.8968 10 6 6.6448 1.8529 1.7378 11 1 6.4860 2.1614 2.7606 12 6 7.9501 1.6777 1.2524 13 7 8.1422 1.3041 0.0155 14 14 9.4124 1.9787 2.3751 15 1 9.7686 0.7171 3.0728 16 1 10.5694 2.4414 1.5676 17 1 9.0615 3.0166 3.3774 18 8 4.2439 1.7566 1.2253 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 2.0422 1.6181 -2.0513 25 1 0.6477 2.1684 -1.3314 26 1 9.0442 1.1827 -0.3198 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083339821.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:44 Heat of formation + Delta-G solvation = 10.548193 kcal Electronic energy + Delta-G solvation = -12285.623889 eV Core-core repulsion = 9979.358459 eV Total energy + Delta-G solvation = -2306.265430 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.64301 -36.45431 -34.03903 -33.67174 -30.67182 -29.51164 -26.79674 -24.64072 -21.84865 -21.37099 -19.80124 -17.63458 -16.22317 -15.43616 -15.24207 -14.65268 -14.16521 -13.94287 -13.49879 -13.28242 -12.14979 -11.84438 -11.59347 -11.38515 -11.28713 -10.93848 -10.71841 -10.52593 -10.30499 -9.74464 -9.62271 -8.65812 -8.43257 -7.83733 -6.83054 -4.84547 2.81799 2.99873 3.05417 3.22922 3.74821 4.19781 4.25751 5.05105 5.14841 5.21858 5.22495 5.44232 5.66915 5.81679 5.97898 6.07746 6.23700 6.44311 6.76953 7.04828 7.37813 7.45781 7.59103 7.81087 8.07427 8.31007 8.55688 10.09769 10.58912 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.088158 B = 0.008287 C = 0.008017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.533806 B = 3377.834510 C = 3491.736518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.217 3.783 4 H 0.087 0.913 5 N -0.834 5.834 6 C 0.019 3.981 7 N -0.269 5.269 8 N -0.361 5.361 9 C 0.290 3.710 10 C -0.426 4.426 11 H 0.095 0.905 12 C 0.072 3.928 13 N -0.724 5.724 14 Si 0.934 3.066 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.259 1.259 18 O -0.273 6.273 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.350 0.650 25 H 0.338 0.662 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 -1.118 1.908 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.104 3.896 4 H 0.105 0.895 5 N -0.366 5.366 6 C -0.193 4.193 7 N -0.120 5.120 8 N -0.215 5.215 9 C 0.105 3.895 10 C -0.462 4.462 11 H 0.113 0.887 12 C -0.154 4.154 13 N -0.348 5.348 14 Si 0.756 3.244 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.182 1.182 18 O -0.161 6.161 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.165 0.835 25 H 0.152 0.848 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.442 -0.882 0.855 6.558 hybrid contribution -0.216 -0.435 1.406 1.488 sum -6.658 -1.317 2.261 7.154 Atomic orbital electron populations 1.21800 0.95664 1.01728 1.01603 1.22344 0.95471 0.98173 1.03433 1.18983 0.84481 0.92500 0.93613 0.89472 1.58657 1.15008 1.58911 1.04070 1.26106 0.95871 1.13537 0.83764 1.74006 0.97524 1.13483 1.26977 1.75714 1.08862 1.29508 1.07432 1.23779 0.79962 0.93392 0.92369 1.18218 0.86780 1.43164 0.98001 0.88684 1.25948 1.00160 0.93455 0.95832 1.69943 1.24134 1.26638 1.14070 0.85898 0.78822 0.79769 0.79865 1.19054 1.19702 1.18247 1.84666 1.19830 1.72875 1.38750 0.92537 0.92569 0.92875 0.91336 0.91232 0.83537 0.84778 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.68 37.16 0.36 -1.33 15 2 C -0.15 -2.37 5.56 -26.73 -0.15 -2.52 15 3 C 0.22 3.98 3.35 -68.86 -0.23 3.75 15 4 H 0.09 1.51 8.14 -51.93 -0.42 1.08 15 5 N -0.83 -13.63 9.17 -5.65 -0.05 -13.68 15 6 C 0.02 0.48 7.30 -12.58 -0.09 0.38 15 7 N -0.27 -7.52 12.12 32.68 0.40 -7.13 15 8 N -0.36 -11.16 10.52 30.64 0.32 -10.84 15 9 C 0.29 8.66 7.85 -16.48 -0.13 8.53 15 10 C -0.43 -11.81 9.46 -38.16 -0.36 -12.17 15 11 H 0.10 2.42 7.85 -52.49 -0.41 2.00 15 12 C 0.07 1.86 5.50 -17.27 -0.09 1.77 15 13 N -0.72 -19.87 11.93 55.57 0.66 -19.20 15 14 Si 0.93 18.46 29.56 -169.99 -5.03 13.43 15 15 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 17 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 18 O -0.27 -7.61 10.90 3.01 0.03 -7.57 15 19 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.05 0.52 6.87 -51.93 -0.36 0.17 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.35 5.88 8.87 -39.29 -0.35 5.53 15 25 H 0.34 4.21 7.55 -39.30 -0.30 3.91 15 26 H 0.28 6.92 8.29 -40.82 -0.34 6.59 15 LS Contribution 234.37 15.07 3.53 3.53 Total: -1.00 -32.64 234.37 -3.49 -36.13 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.66 Total: 6.92 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.70 Total: -1.59 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 1.33 Total: -50.85 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.03 Total: -7.57 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.64 -3.49 -36.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083339821.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.679 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds