Wall clock time and date at job start Mon Mar 30 2020 01:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 N 1.46901 * 109.46860 * 65.00222 * 3 2 1 6 6 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 7 7 N 1.31133 * 126.05699 * 285.02788 * 6 3 2 8 8 N 1.28677 * 109.59041 * 179.97438 * 7 6 3 9 9 C 1.32851 * 109.00464 * 359.97438 * 8 7 6 10 10 C 1.39912 * 126.46521 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00014 * 179.97438 * 10 9 8 12 12 C 1.40347 * 119.99768 * 359.97438 * 10 9 8 13 13 N 1.30620 * 120.00412 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99652 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47287 * 90.00072 * 14 12 10 16 16 H 1.48501 * 109.47193 * 209.99886 * 14 12 10 17 17 H 1.48503 * 109.47272 * 329.99965 * 14 12 10 18 18 O 1.34305 * 126.05612 * 104.71172 * 6 3 2 19 19 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 20 20 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 21 21 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 23 23 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 24 24 H 1.00898 * 111.00245 * 59.99865 * 5 3 2 25 25 H 1.00904 * 111.00313 * 183.95682 * 5 3 2 26 26 H 0.97001 * 120.00376 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5420 1.4443 -0.1238 7 7 4.3950 1.1407 0.8247 8 7 5.5960 1.2464 0.3750 9 6 5.5497 1.6268 -0.8970 10 6 6.6449 1.8522 -1.7380 11 1 6.4860 2.1605 -2.7608 12 6 7.9501 1.6777 -1.2523 13 7 8.1423 1.3054 -0.0151 14 14 9.4124 1.9779 -2.3753 15 1 9.8308 3.3992 -2.2739 16 1 10.5385 1.1001 -1.9671 17 1 9.0304 1.6732 -3.7776 18 8 4.2438 1.7514 -1.2270 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5140 -0.8900 21 1 -0.3633 -1.0275 -0.0005 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 2.0423 1.6179 2.0513 25 1 1.9205 3.0717 1.2530 26 1 9.0444 1.1844 0.3204 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083339822.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:46 Heat of formation + Delta-G solvation = 5.964454 kcal Electronic energy + Delta-G solvation = -12293.165400 eV Core-core repulsion = 9986.701205 eV Total energy + Delta-G solvation = -2306.464195 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.72585 -36.17163 -34.10985 -33.74132 -30.90134 -29.47663 -26.61260 -24.59839 -21.82557 -21.38245 -19.82763 -17.71729 -15.88580 -15.58451 -15.26035 -15.18070 -14.18527 -13.85921 -13.35839 -12.89632 -12.03590 -11.83643 -11.54128 -11.41390 -11.10200 -10.76257 -10.59186 -10.52442 -10.40020 -9.85851 -9.67696 -8.93065 -8.56453 -7.91868 -6.90000 -4.92701 2.75553 2.95541 3.01057 3.15938 3.70582 4.17205 4.28347 4.93148 5.07333 5.38022 5.46256 5.65490 5.75473 6.07177 6.15421 6.26621 6.50752 6.62669 6.69277 6.96888 7.20866 7.44723 7.50432 7.77712 7.99997 8.22945 8.48249 10.02581 10.48428 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.086805 B = 0.008322 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.486216 B = 3363.886562 C = 3475.250853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.213 3.787 4 H 0.087 0.913 5 N -0.824 5.824 6 C -0.029 4.029 7 N -0.274 5.274 8 N -0.360 5.360 9 C 0.288 3.712 10 C -0.425 4.425 11 H 0.096 0.904 12 C 0.072 3.928 13 N -0.723 5.723 14 Si 0.934 3.066 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.258 1.258 18 O -0.274 6.274 19 H 0.066 0.934 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.348 0.652 25 H 0.340 0.660 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 0.197 -1.903 6.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C 0.099 3.901 4 H 0.105 0.895 5 N -0.352 5.352 6 C -0.242 4.242 7 N -0.126 5.126 8 N -0.215 5.215 9 C 0.104 3.896 10 C -0.461 4.461 11 H 0.114 0.886 12 C -0.154 4.154 13 N -0.347 5.347 14 Si 0.757 3.243 15 H -0.190 1.190 16 H -0.196 1.196 17 H -0.182 1.182 18 O -0.161 6.161 19 H 0.085 0.915 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.162 0.838 25 H 0.152 0.848 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.985 -0.400 -0.786 6.050 hybrid contribution 1.417 0.631 -1.521 2.172 sum -4.568 0.231 -2.307 5.123 Atomic orbital electron populations 1.21669 0.95129 1.00691 1.02304 1.21519 0.95927 0.94809 1.02519 1.19379 0.81202 0.95994 0.93523 0.89505 1.59304 1.64764 1.07102 1.04053 1.27944 0.97969 1.14432 0.83853 1.74006 0.97701 1.13236 1.27650 1.75703 1.08724 1.29485 1.07577 1.23823 0.80238 0.93279 0.92290 1.18249 0.86817 1.43022 0.97972 0.88633 1.25960 1.00220 0.93390 0.95880 1.69930 1.24240 1.26393 1.14145 0.85889 0.78791 0.79315 0.80328 1.18984 1.19650 1.18208 1.84711 1.19689 1.72864 1.38856 0.91527 0.93233 0.93469 0.91854 0.91463 0.83843 0.84821 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.80 37.16 0.36 -1.45 15 2 C -0.11 -1.77 5.56 -26.73 -0.15 -1.92 15 3 C 0.21 3.88 3.29 -68.86 -0.23 3.65 15 4 H 0.09 1.50 8.14 -51.93 -0.42 1.07 15 5 N -0.82 -13.18 8.67 -5.65 -0.05 -13.23 15 6 C -0.03 -0.70 7.29 -12.58 -0.09 -0.79 15 7 N -0.27 -7.47 12.11 32.68 0.40 -7.07 15 8 N -0.36 -10.93 10.52 30.64 0.32 -10.61 15 9 C 0.29 8.46 7.85 -16.48 -0.13 8.33 15 10 C -0.42 -11.62 9.46 -38.16 -0.36 -11.98 15 11 H 0.10 2.40 7.85 -52.48 -0.41 1.99 15 12 C 0.07 1.83 5.50 -17.27 -0.10 1.73 15 13 N -0.72 -19.59 11.93 55.57 0.66 -18.92 15 14 Si 0.93 18.19 29.56 -169.99 -5.03 13.17 15 15 H -0.26 -5.04 7.11 56.52 0.40 -4.63 15 16 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 18 O -0.27 -7.45 10.90 2.99 0.03 -7.42 15 19 H 0.07 0.86 7.75 -51.93 -0.40 0.45 15 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.05 0.54 8.14 -51.94 -0.42 0.12 15 22 H 0.06 1.07 8.14 -51.92 -0.42 0.64 15 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.35 5.76 8.87 -39.29 -0.35 5.41 15 25 H 0.34 5.30 9.06 -39.29 -0.36 4.94 15 26 H 0.29 6.85 8.29 -40.82 -0.34 6.51 15 LS Contribution 236.31 15.07 3.56 3.56 Total: -1.00 -31.20 236.31 -3.55 -34.75 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.77 Total: 8.19 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.69 Total: -2.42 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 1.33 Total: -49.83 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.03 Total: -7.42 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.20 -3.55 -34.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083339822.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.717 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds