Wall clock time and date at job start Mon Mar 30 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 6 6 N 1.31126 * 126.05668 * 60.02156 * 5 2 1 7 7 N 1.28686 * 109.58521 * 179.97438 * 6 5 2 8 8 C 1.32846 * 109.00943 * 359.97438 * 7 6 5 9 9 C 1.39905 * 126.46664 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00289 * 179.97438 * 9 8 7 11 11 C 1.40349 * 119.99914 * 359.97438 * 9 8 7 12 12 N 1.30623 * 120.00246 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99751 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47291 * 89.99875 * 13 11 9 15 15 H 1.48508 * 109.47024 * 209.99805 * 13 11 9 16 16 H 1.48493 * 109.47535 * 329.99588 * 13 11 9 17 17 O 1.34301 * 126.05300 * 239.71380 * 5 2 1 18 18 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 21 21 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 22 22 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 24 24 H 1.00900 * 111.00500 * 176.04192 * 4 2 1 25 25 H 1.00903 * 111.00383 * 300.00193 * 4 2 1 26 26 H 0.96991 * 120.00141 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0324 -0.7103 -1.2306 6 7 1.7902 -0.3671 -2.4727 7 7 2.3739 -1.1918 -3.2697 8 6 3.0195 -2.1041 -2.5516 9 6 3.7755 -3.1713 -3.0486 10 1 4.2593 -3.8544 -2.3662 11 6 3.9050 -3.3541 -4.4341 12 7 3.3195 -2.5283 -5.2595 13 14 4.9137 -4.7795 -5.0977 14 1 4.0382 -5.9659 -5.2737 15 1 5.5037 -4.4011 -6.4070 16 1 6.0012 -5.1045 -4.1402 17 8 2.8121 -1.8036 -1.2491 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.6767 1.9563 0.8900 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8899 24 1 3.0262 -0.7626 1.1908 25 1 1.6962 -0.2350 2.0385 26 1 3.4087 -2.6549 -6.2170 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083339823.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:19 Heat of formation + Delta-G solvation = -14.959181 kcal Electronic energy + Delta-G solvation = -12498.795340 eV Core-core repulsion = 10191.423828 eV Total energy + Delta-G solvation = -2307.371512 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.74516 -38.11815 -36.07225 -35.74168 -31.58235 -30.40592 -28.23364 -27.90440 -24.19258 -23.50502 -20.94435 -19.59702 -17.74623 -17.33997 -17.15593 -16.35784 -15.58946 -15.09443 -15.01543 -14.16397 -13.60462 -13.26398 -13.16172 -13.02198 -12.85749 -12.66760 -12.45095 -12.32947 -12.03918 -11.84735 -11.44397 -10.79745 -10.01623 -9.69947 -8.76316 -6.96184 0.98001 1.37738 1.54853 1.58516 2.08346 2.23774 2.42040 3.07400 3.35692 3.76732 4.05207 4.13332 4.65714 4.67579 4.70449 4.84018 4.90745 5.05647 5.12963 5.25432 5.35859 5.58224 6.01223 6.12740 6.22993 6.50579 6.62841 8.20587 8.47313 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.076393 B = 0.009403 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.437604 B = 2976.948791 C = 3155.701325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.231 3.769 3 C -0.164 4.164 4 N -0.838 5.838 5 C 0.047 3.953 6 N -0.313 5.313 7 N -0.408 5.408 8 C 0.254 3.746 9 C -0.452 4.452 10 H 0.109 0.891 11 C 0.026 3.974 12 N -0.771 5.771 13 Si 1.023 2.977 14 H -0.255 1.255 15 H -0.261 1.261 16 H -0.247 1.247 17 O -0.272 6.272 18 H 0.103 0.897 19 H 0.044 0.956 20 H 0.057 0.943 21 H 0.105 0.895 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.345 0.655 25 H 0.364 0.636 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 1.609 8.197 8.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.224 4.224 4 N -0.372 5.372 5 C -0.167 4.167 6 N -0.161 5.161 7 N -0.262 5.262 8 C 0.069 3.931 9 C -0.488 4.488 10 H 0.127 0.873 11 C -0.196 4.196 12 N -0.395 5.395 13 Si 0.839 3.161 14 H -0.179 1.179 15 H -0.185 1.185 16 H -0.170 1.170 17 O -0.160 6.160 18 H 0.122 0.878 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.124 0.876 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.159 0.841 25 H 0.181 0.819 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.717 1.741 6.686 6.946 hybrid contribution 1.222 -0.168 0.583 1.364 sum 0.504 1.573 7.269 7.454 Atomic orbital electron populations 1.21782 0.91048 1.02139 1.03504 1.18931 0.95738 0.89590 0.82096 1.22532 1.00927 0.94792 1.04143 1.58612 1.17085 1.58091 1.03381 1.27674 1.01026 0.90257 0.97746 1.73951 1.19285 1.23371 0.99474 1.75610 1.20510 1.07163 1.22898 1.24371 0.95992 0.97117 0.75639 1.18844 1.28036 1.07956 0.93963 0.87311 1.27262 0.96221 1.00848 0.95287 1.70033 1.30924 1.33200 1.05370 0.84624 0.77935 0.75248 0.78258 1.17924 1.18463 1.16971 1.84727 1.58413 1.41710 1.31159 0.87795 0.93700 0.92352 0.87597 0.93511 0.92400 0.84147 0.81933 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.75 71.98 0.63 -3.28 15 2 C 0.23 8.12 1.19 2.78 0.00 8.12 15 3 C -0.16 -4.78 8.74 71.98 0.63 -4.15 15 4 N -0.84 -24.98 8.69 -154.53 -1.34 -26.32 15 5 C 0.05 2.38 6.65 88.22 0.59 2.97 15 6 N -0.31 -18.08 12.25 -164.71 -2.02 -20.10 15 7 N -0.41 -26.22 10.52 -169.76 -1.79 -28.01 15 8 C 0.25 15.65 7.85 84.94 0.67 16.32 15 9 C -0.45 -25.60 9.46 23.19 0.22 -25.38 15 10 H 0.11 5.60 7.85 -2.91 -0.02 5.58 15 11 C 0.03 1.33 5.50 85.39 0.47 1.80 15 12 N -0.77 -43.30 11.93 21.90 0.26 -43.04 15 13 Si 1.02 37.21 29.56 68.60 2.03 39.24 15 14 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 15 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 16 H -0.25 -8.41 7.11 99.48 0.71 -7.71 15 17 O -0.27 -15.34 10.57 -12.24 -0.13 -15.47 15 18 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 19 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.06 1.93 8.14 -2.38 -0.02 1.91 15 21 H 0.11 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.35 10.54 8.89 -89.69 -0.80 9.75 15 25 H 0.36 7.57 9.00 -89.69 -0.81 6.76 15 26 H 0.30 14.60 8.29 -92.72 -0.77 13.83 15 Total: -1.00 -74.28 235.87 -0.17 -74.45 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.39 Total: 22.85 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 3.21 Total: -3.61 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -4.89 Total: -117.47 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.13 Total: -15.47 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -74.28 -0.17 -74.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083339823.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.494 kcal (2) G-P(sol) polarization free energy of solvation -74.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds