Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29941 * 126.28744 * 2 1 4 4 O 1.21300 * 110.24994 * 179.84392 * 3 2 1 5 5 C 1.33637 * 109.81377 * 0.42873 * 4 3 2 6 6 C 1.50698 * 126.55413 * 179.75568 * 5 4 3 7 7 C 1.53003 * 109.46911 * 244.97453 * 6 5 4 8 8 N 1.46899 * 109.47156 * 124.97798 * 6 5 4 9 9 C 1.50698 * 109.47255 * 4.97414 * 6 5 4 10 10 H 1.07997 * 119.99575 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00347 * 180.02562 * 9 6 5 12 12 N 1.31508 * 120.00385 * 180.02562 * 11 9 6 13 13 Si 1.86799 * 119.99659 * 359.97438 * 11 9 6 14 14 H 1.48508 * 109.47122 * 90.00372 * 13 11 9 15 15 H 1.48504 * 109.47221 * 210.00022 * 13 11 9 16 16 H 1.48500 * 109.47366 * 330.00292 * 13 11 9 17 17 N 1.31136 * 106.89648 * 359.73810 * 5 4 3 18 18 H 1.09001 * 109.46953 * 269.68287 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.67885 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.68516 * 1 2 3 21 21 H 1.08995 * 109.47410 * 60.00053 * 7 6 5 22 22 H 1.09005 * 109.46953 * 179.97438 * 7 6 5 23 23 H 1.08999 * 109.47298 * 299.99522 * 7 6 5 24 24 H 1.00904 * 110.99786 * 299.99967 * 8 6 5 25 25 H 1.00897 * 111.00102 * 63.95062 * 8 6 5 26 26 H 0.97000 * 120.00211 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0031 5 6 3.5299 -0.6212 -0.0040 6 6 4.7970 -1.4370 -0.0083 7 6 4.8954 -2.2192 -1.3196 8 7 4.7789 -2.3756 1.1216 9 6 5.9856 -0.5195 0.1198 10 1 5.8382 0.5475 0.1970 11 6 7.2613 -1.0424 0.1383 12 7 8.2985 -0.2418 0.2506 13 14 7.5161 -2.8881 0.0055 14 1 7.6488 -3.2678 -1.4241 15 1 8.7509 -3.2712 0.7360 16 1 6.3512 -3.5927 0.5987 17 7 2.3030 -1.0841 -0.0060 18 1 -0.3633 -0.0057 1.0277 19 1 -0.3634 0.8928 -0.5088 20 1 -0.3633 -0.8871 -0.5187 21 1 4.9088 -1.5228 -2.1579 22 1 5.8121 -2.8089 -1.3229 23 1 4.0357 -2.8828 -1.4122 24 1 4.7142 -1.8830 1.9999 25 1 4.0283 -3.0430 1.0252 26 1 9.1960 -0.6097 0.2640 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330767.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = 51.462488 kcal Electronic energy + Delta-G solvation = -12754.964745 eV Core-core repulsion = 10450.473492 eV Total energy + Delta-G solvation = -2304.491253 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.44538 -38.33340 -36.83614 -34.21797 -32.99221 -30.27492 -29.84950 -27.28104 -25.39039 -23.64646 -21.55175 -18.99251 -18.57539 -18.34939 -16.98036 -16.45647 -15.83870 -14.96922 -14.86452 -14.42364 -14.10453 -13.99258 -13.47737 -13.25415 -12.99462 -12.45143 -12.44524 -12.28101 -12.02284 -11.58016 -11.34462 -10.90122 -10.70919 -9.23550 -8.26918 -6.46108 0.19739 1.26195 1.52140 1.63974 1.93399 2.04878 2.57102 2.76040 3.10789 3.19977 3.84155 4.08942 4.51330 4.52321 4.58034 4.58726 4.71161 4.85953 4.95123 5.10532 5.22724 5.44661 6.03434 6.24282 6.65125 6.78734 7.23534 7.32446 8.85932 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.063110 B = 0.012083 C = 0.010890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.563541 B = 2316.840427 C = 2570.556570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.161 3.839 3 N -0.428 5.428 4 O 0.050 5.950 5 C 0.195 3.805 6 C 0.305 3.695 7 C -0.132 4.132 8 N -0.806 5.806 9 C -0.537 4.537 10 H 0.039 0.961 11 C 0.041 3.959 12 N -0.939 5.939 13 Si 0.932 3.068 14 H -0.290 1.290 15 H -0.324 1.324 16 H -0.155 1.155 17 N -0.506 5.506 18 H 0.104 0.896 19 H 0.097 0.903 20 H 0.106 0.894 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.342 0.658 25 H 0.342 0.658 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.986 -5.770 -0.491 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.113 4.113 3 N -0.145 5.145 4 O 0.002 5.998 5 C -0.028 4.028 6 C 0.210 3.790 7 C -0.191 4.191 8 N -0.338 5.338 9 C -0.575 4.575 10 H 0.057 0.943 11 C -0.159 4.159 12 N -0.577 5.577 13 Si 0.759 3.241 14 H -0.218 1.218 15 H -0.254 1.254 16 H -0.075 1.075 17 N -0.242 5.242 18 H 0.123 0.877 19 H 0.115 0.885 20 H 0.125 0.875 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.157 0.843 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.722 -5.451 -0.711 13.859 hybrid contribution 0.141 0.426 0.131 0.468 sum -12.581 -5.025 -0.579 13.560 Atomic orbital electron populations 1.20337 0.79589 1.05784 1.05569 1.26863 1.02308 0.83353 0.98734 1.74595 0.89905 1.25787 1.24203 1.85349 1.22175 1.26392 1.65921 1.31023 0.98399 0.81713 0.91641 1.17561 0.82577 0.86879 0.92019 1.22028 1.02099 0.99494 0.95431 1.59887 1.51208 1.18111 1.04587 1.20748 0.90059 0.92767 1.53976 0.94296 1.25788 0.94654 1.03926 0.91561 1.70055 0.99425 1.38342 1.49859 0.86445 0.79307 0.81259 0.77131 1.21781 1.25378 1.07516 1.71864 0.99345 1.29777 1.23192 0.87743 0.88472 0.87513 0.92613 0.91749 0.90798 0.84404 0.84348 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.14 10.51 71.24 0.75 -0.39 15 2 C 0.16 5.46 8.22 138.47 1.14 6.59 15 3 N -0.43 -17.37 12.16 -60.34 -0.73 -18.10 15 4 O 0.05 2.27 10.30 74.89 0.77 3.04 15 5 C 0.19 8.16 6.87 88.38 0.61 8.77 15 6 C 0.30 13.04 0.76 2.04 0.00 13.04 15 7 C -0.13 -5.12 8.24 71.98 0.59 -4.53 15 8 N -0.81 -29.78 5.51 -157.51 -0.87 -30.65 15 9 C -0.54 -29.10 8.71 25.60 0.22 -28.87 15 10 H 0.04 2.41 7.27 -2.91 -0.02 2.38 15 11 C 0.04 2.30 5.45 84.66 0.46 2.76 15 12 N -0.94 -57.34 13.96 21.45 0.30 -57.04 15 13 Si 0.93 41.82 23.86 68.60 1.64 43.46 15 14 H -0.29 -12.74 6.87 99.48 0.68 -12.05 15 15 H -0.32 -15.33 7.11 99.48 0.71 -14.62 15 16 H -0.15 -5.95 5.16 99.48 0.51 -5.44 15 17 N -0.51 -18.54 11.55 -303.22 -3.50 -22.04 15 18 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 19 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 20 H 0.11 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.06 2.54 3.27 -2.38 -0.01 2.53 15 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.34 12.55 8.98 -89.69 -0.81 11.74 15 25 H 0.34 10.66 8.98 -89.70 -0.81 9.85 15 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 15 Total: -1.00 -65.88 222.75 0.77 -65.11 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.60 Total: 18.85 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 3.77 Total: -2.63 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -4.81 Total: -127.83 kcal Atomic # 8 Polarization: 2.27 SS G_CDS: 0.77 Total: 3.04 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.64 Total: 43.46 kcal Total: -65.88 0.77 -65.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330767.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.576 kcal (2) G-P(sol) polarization free energy of solvation -65.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds