Wall clock time and date at job start Mon Mar 30 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29947 * 126.28860 * 2 1 4 4 O 1.21304 * 110.24919 * 179.84436 * 3 2 1 5 5 C 1.33640 * 109.80773 * 0.42554 * 4 3 2 6 6 C 1.50707 * 126.54719 * 179.75447 * 5 4 3 7 7 C 1.53004 * 109.46703 * 119.97638 * 6 5 4 8 8 N 1.46892 * 109.47596 * 239.97920 * 6 5 4 9 9 C 1.50700 * 109.47121 * 359.97438 * 6 5 4 10 10 H 1.08007 * 120.00209 * 4.37651 * 9 6 5 11 11 C 1.37873 * 119.99998 * 184.37553 * 9 6 5 12 12 N 1.31516 * 120.00279 * 6.26825 * 11 9 6 13 13 Si 1.86800 * 120.00005 * 186.26607 * 11 9 6 14 14 H 1.48497 * 109.47566 * 85.18272 * 13 11 9 15 15 H 1.48504 * 109.47315 * 205.18358 * 13 11 9 16 16 H 1.48505 * 109.47467 * 325.18013 * 13 11 9 17 17 N 1.31126 * 106.90054 * 359.73786 * 5 4 3 18 18 H 1.09003 * 109.46978 * 269.68786 * 1 2 3 19 19 H 1.08999 * 109.47538 * 149.68435 * 1 2 3 20 20 H 1.09005 * 109.46914 * 29.68642 * 1 2 3 21 21 H 1.09000 * 109.47091 * 54.48281 * 7 6 5 22 22 H 1.08995 * 109.46732 * 174.48461 * 7 6 5 23 23 H 1.09001 * 109.47211 * 294.48149 * 7 6 5 24 24 H 1.00907 * 110.99917 * 296.05044 * 8 6 5 25 25 H 1.00905 * 111.00077 * 59.99598 * 8 6 5 26 26 H 0.96996 * 120.00336 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0031 5 6 3.5298 -0.6212 -0.0039 6 6 4.7969 -1.4371 -0.0082 7 6 4.8354 -2.3257 1.2367 8 7 4.8335 -2.2785 -1.2117 9 6 5.9884 -0.5145 -0.0041 10 1 5.8445 0.5532 0.0725 11 6 7.2624 -1.0333 -0.0980 12 7 7.4345 -2.3190 -0.3150 13 14 8.7440 0.0899 0.0827 14 1 9.0724 0.2484 1.5222 15 1 9.9051 -0.5041 -0.6274 16 1 8.4325 1.4185 -0.5031 17 7 2.3029 -1.0841 -0.0059 18 1 -0.3633 -0.0056 1.0277 19 1 -0.3634 -0.8871 -0.5187 20 1 -0.3633 0.8928 -0.5090 21 1 3.9252 -2.9235 1.2848 22 1 5.7013 -2.9857 1.1852 23 1 4.9072 -1.7009 2.1270 24 1 4.0805 -2.9502 -1.2064 25 1 4.8090 -1.7145 -2.0481 26 1 8.3307 -2.6839 -0.3815 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330769.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:05 Heat of formation + Delta-G solvation = 44.213705 kcal Electronic energy + Delta-G solvation = -12691.060827 eV Core-core repulsion = 10386.255243 eV Total energy + Delta-G solvation = -2304.805584 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.36432 -37.95374 -36.75910 -33.98526 -32.64026 -30.07760 -29.55207 -27.27560 -25.17165 -23.45802 -21.51518 -18.91700 -18.52728 -17.96335 -16.78518 -16.15322 -15.71782 -14.97249 -14.59685 -14.39792 -13.95497 -13.49181 -13.20455 -12.94606 -12.77006 -12.57708 -12.44476 -12.19519 -12.02008 -11.91952 -11.08559 -10.81457 -10.50488 -9.29813 -7.95983 -6.21729 0.27356 1.33323 1.50073 1.52620 1.60025 2.14048 2.47304 2.91294 3.23949 3.26930 4.09563 4.24030 4.58425 4.60632 4.70994 4.85317 4.93264 5.03151 5.13006 5.17194 5.67410 5.81475 6.03809 6.46706 6.90320 7.03800 7.31123 7.50638 9.02945 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.057563 B = 0.011386 C = 0.010171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.309943 B = 2458.663502 C = 2752.292755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.156 3.844 3 N -0.429 5.429 4 O 0.050 5.950 5 C 0.191 3.809 6 C 0.328 3.672 7 C -0.106 4.106 8 N -0.779 5.779 9 C -0.566 4.566 10 H 0.053 0.947 11 C 0.056 3.944 12 N -0.851 5.851 13 Si 0.945 3.055 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.277 1.277 17 N -0.519 5.519 18 H 0.103 0.897 19 H 0.102 0.898 20 H 0.098 0.902 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.320 0.680 25 H 0.326 0.674 26 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 1.410 0.503 8.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 N -0.147 5.147 4 O 0.002 5.998 5 C -0.032 4.032 6 C 0.233 3.767 7 C -0.165 4.165 8 N -0.307 5.307 9 C -0.605 4.605 10 H 0.071 0.929 11 C -0.151 4.151 12 N -0.484 5.484 13 Si 0.771 3.229 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.202 1.202 17 N -0.255 5.255 18 H 0.121 0.879 19 H 0.121 0.879 20 H 0.117 0.883 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.133 0.867 25 H 0.138 0.862 26 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.050 1.495 0.723 8.219 hybrid contribution 0.148 0.963 -0.177 0.990 sum -7.902 2.458 0.546 8.293 Atomic orbital electron populations 1.20310 0.79815 1.05628 1.05463 1.26851 1.02297 0.83497 0.99034 1.74535 0.90056 1.25613 1.24449 1.85299 1.22017 1.26378 1.66070 1.31906 0.98999 0.81630 0.90652 1.17488 0.81139 0.87126 0.90916 1.21556 1.01051 0.98662 0.95257 1.59179 1.50198 1.18373 1.02938 1.20944 0.90654 0.92363 1.56528 0.92861 1.25402 1.00362 0.96122 0.93240 1.70243 1.21915 1.12319 1.43910 0.85801 0.79525 0.79302 0.78246 1.20085 1.20793 1.20195 1.71894 0.99966 1.30039 1.23597 0.87852 0.87887 0.88332 0.94299 0.90598 0.94273 0.86729 0.86169 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.24 10.51 71.24 0.75 -0.49 15 2 C 0.16 5.68 8.22 138.46 1.14 6.82 15 3 N -0.43 -17.80 12.16 -60.32 -0.73 -18.53 15 4 O 0.05 2.32 10.29 74.85 0.77 3.09 15 5 C 0.19 8.55 6.87 88.38 0.61 9.16 15 6 C 0.33 15.51 0.79 2.04 0.00 15.51 15 7 C -0.11 -4.83 8.47 71.98 0.61 -4.22 15 8 N -0.78 -35.06 7.74 -157.51 -1.22 -36.28 15 9 C -0.57 -29.53 8.08 25.60 0.21 -29.32 15 10 H 0.05 2.86 7.03 -2.91 -0.02 2.83 15 11 C 0.06 2.87 5.22 84.65 0.44 3.32 15 12 N -0.85 -44.89 11.11 21.45 0.24 -44.65 15 13 Si 0.95 41.49 29.54 68.60 2.03 43.52 15 14 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 15 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 17 N -0.52 -21.11 11.55 -303.20 -3.50 -24.61 15 18 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 19 H 0.10 2.02 8.14 -2.39 -0.02 2.01 15 20 H 0.10 1.91 8.14 -2.38 -0.02 1.89 15 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.08 3.71 6.82 -2.39 -0.02 3.69 15 23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.32 13.12 8.98 -89.69 -0.81 12.31 15 25 H 0.33 14.45 8.98 -89.69 -0.81 13.64 15 26 H 0.26 13.13 8.31 -92.71 -0.77 12.36 15 Total: -1.00 -57.75 232.70 0.94 -56.81 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.39 Total: 19.89 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 3.75 Total: 0.76 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.22 Total: -124.07 kcal Atomic # 8 Polarization: 2.32 SS G_CDS: 0.77 Total: 3.09 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -57.75 0.94 -56.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330769.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.028 kcal (2) G-P(sol) polarization free energy of solvation -57.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds