Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99722 * 2 1 4 4 H 1.48505 * 109.47036 * 89.99893 * 3 2 1 5 5 H 1.48497 * 109.47042 * 209.99858 * 3 2 1 6 6 H 1.48499 * 109.47150 * 329.99996 * 3 2 1 7 7 C 1.37873 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00339 * 179.56117 * 7 2 1 9 9 C 1.50705 * 119.99713 * 359.56063 * 7 2 1 10 10 O 1.42895 * 110.28574 * 57.16255 * 9 7 2 11 11 C 1.54261 * 110.32218 * 179.28945 * 9 7 2 12 12 C 1.54375 * 105.05992 * 118.89645 * 11 9 7 13 13 N 1.48560 * 104.59477 * 23.85072 * 12 11 9 14 14 C 1.46903 * 111.00271 * 200.95777 * 13 12 11 15 15 C 1.53002 * 117.50111 * 257.58672 * 14 13 12 16 16 C 1.52999 * 117.50139 * 188.96240 * 14 13 12 17 17 C 1.48718 * 104.29160 * 320.57187 * 13 12 11 18 18 H 0.97009 * 120.00001 * 175.50145 * 1 2 3 19 19 H 0.96698 * 114.00405 * 55.49816 * 10 9 7 20 20 H 1.09001 * 110.31947 * 237.79192 * 11 9 7 21 21 H 1.09004 * 110.32352 * 0.02562 * 11 9 7 22 22 H 1.09000 * 110.41714 * 142.62876 * 12 11 9 23 23 H 1.08999 * 110.41200 * 265.07631 * 12 11 9 24 24 H 1.09004 * 115.54476 * 43.28861 * 14 13 12 25 25 H 1.08994 * 117.49595 * 359.97438 * 15 14 13 26 26 H 1.09000 * 117.49874 * 145.02021 * 15 14 13 27 27 H 1.09000 * 117.49600 * 214.98414 * 16 14 13 28 28 H 1.08998 * 117.49894 * 359.97438 * 16 14 13 29 29 H 1.09001 * 110.39116 * 280.64517 * 17 13 12 30 30 H 1.08994 * 110.51290 * 158.14502 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 -0.0066 9 6 1.2511 -2.4991 0.0111 10 8 0.3665 -2.5696 -1.1089 11 6 2.2359 -3.6864 -0.0083 12 6 1.9602 -4.4575 1.3004 13 7 0.5645 -4.0977 1.6600 14 6 0.3122 -4.3302 3.0885 15 6 -0.4723 -5.5866 3.4720 16 6 -1.1319 -4.2102 3.5796 17 6 0.4612 -2.6515 1.3288 18 1 -0.4850 -0.8375 -0.0659 19 1 0.8023 -2.4436 -1.9629 20 1 2.0432 -4.3239 -0.8712 21 1 3.2642 -3.3251 -0.0250 22 1 2.0451 -5.5314 1.1340 23 1 2.6488 -4.1375 2.0824 24 1 1.1026 -4.0040 3.7645 25 1 -0.8015 -6.2403 2.6644 26 1 -0.1981 -6.0872 4.4006 27 1 -1.2915 -3.8053 4.5789 28 1 -1.8947 -3.9583 2.8429 29 1 0.9143 -2.0484 2.1156 30 1 -0.5806 -2.3667 1.1825 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = -23.689645 kcal Electronic energy + Delta-G solvation = -13068.949878 eV Core-core repulsion = 10864.740128 eV Total energy + Delta-G solvation = -2204.209750 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.67582 -36.36571 -33.75234 -32.15944 -28.96845 -27.35057 -24.33678 -22.06590 -21.59639 -19.95591 -19.37940 -17.44511 -16.23652 -15.08054 -14.66906 -13.92226 -13.73432 -13.23486 -12.75747 -12.22510 -12.09695 -11.64675 -11.53131 -11.23095 -10.82527 -10.68054 -10.33803 -10.10556 -10.05170 -10.00821 -9.68378 -9.11470 -8.49392 -8.12439 -7.76316 -6.32054 -4.19687 3.39926 3.42842 3.59145 4.09716 4.42579 4.52895 5.23858 5.25559 5.30061 5.49098 5.61439 5.73230 5.83580 5.87267 5.96839 6.07450 6.24045 6.43161 6.45367 6.54358 6.74401 6.77547 7.07085 7.27274 7.50610 7.76413 8.03542 8.34567 8.86681 9.17598 9.65378 11.04892 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045126 B = 0.011347 C = 0.010502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.340773 B = 2467.047653 C = 2665.467603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.036 3.964 3 Si 1.066 2.934 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.642 4.642 8 H 0.051 0.949 9 C 0.235 3.765 10 O -0.573 6.573 11 C -0.143 4.143 12 C 0.043 3.957 13 N -0.490 5.490 14 C -0.003 4.003 15 C -0.168 4.168 16 C -0.170 4.170 17 C 0.067 3.933 18 H 0.290 0.710 19 H 0.358 0.642 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -6.727 4.258 8.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.174 4.174 3 Si 0.894 3.106 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.680 4.680 8 H 0.070 0.930 9 C 0.196 3.804 10 O -0.378 6.378 11 C -0.181 4.181 12 C -0.085 4.085 13 N -0.215 5.215 14 C -0.112 4.112 15 C -0.206 4.206 16 C -0.207 4.207 17 C -0.060 4.060 18 H 0.104 0.896 19 H 0.203 0.797 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.843 -5.528 4.511 7.184 hybrid contribution 1.333 -1.075 0.109 1.716 sum 2.176 -6.602 4.620 8.347 Atomic orbital electron populations 1.70599 1.06850 1.33156 1.42353 1.25759 0.96571 1.02280 0.92755 0.83612 0.74751 0.75399 0.76792 1.21475 1.21508 1.20944 1.22470 0.94094 0.91779 1.59607 0.93035 1.19534 0.85496 0.91797 0.83610 1.86379 1.39913 1.95074 1.16397 1.23028 1.00879 0.98150 0.96035 1.22921 0.89128 0.99186 0.97247 1.65308 1.23505 1.19574 1.13075 1.22576 0.94770 1.02701 0.91188 1.22962 1.04381 0.91103 1.02155 1.22931 0.95882 1.00060 1.01841 1.23111 1.01025 0.84979 0.96920 0.89633 0.79658 0.92382 0.91763 0.91611 0.94625 0.90206 0.88516 0.89358 0.89123 0.88347 0.93304 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.30 55.43 0.74 -25.95 16 2 C 0.04 1.00 5.28 -17.82 -0.09 0.91 16 3 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.64 -17.62 8.04 -34.44 -0.28 -17.90 16 8 H 0.05 1.41 7.36 -52.49 -0.39 1.03 16 9 C 0.24 5.93 0.91 -90.38 -0.08 5.85 16 10 O -0.57 -14.72 11.36 -35.23 -0.40 -15.12 16 11 C -0.14 -3.07 6.44 -25.35 -0.16 -3.24 16 12 C 0.04 0.85 6.50 -2.18 -0.01 0.83 16 13 N -0.49 -10.27 5.51 -221.88 -1.22 -11.49 16 14 C 0.00 -0.05 4.90 -67.71 -0.33 -0.38 16 15 C -0.17 -2.46 10.46 -26.73 -0.28 -2.74 16 16 C -0.17 -2.68 10.33 -26.73 -0.28 -2.96 16 17 C 0.07 1.63 4.80 -2.09 -0.01 1.62 16 18 H 0.29 8.78 4.89 -40.82 -0.20 8.58 16 19 H 0.36 8.23 9.05 45.56 0.41 8.65 16 20 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 21 H 0.06 1.36 7.42 -51.93 -0.39 0.98 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.04 0.68 7.90 -51.93 -0.41 0.27 16 24 H 0.08 1.38 8.01 -51.93 -0.42 0.97 16 25 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 29 H 0.05 1.26 7.71 -51.93 -0.40 0.86 16 30 H 0.07 1.94 7.06 -51.93 -0.37 1.57 16 LS Contribution 247.15 15.07 3.72 3.72 Total: -1.00 -30.06 247.15 -7.25 -37.31 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.48 Total: 9.84 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.53 Total: -18.01 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.49 Total: -37.44 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.40 Total: -15.12 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.06 -7.25 -37.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.623 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds