Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99722 * 2 1 4 4 H 1.48505 * 109.47036 * 89.99893 * 3 2 1 5 5 H 1.48497 * 109.47042 * 209.99858 * 3 2 1 6 6 H 1.48499 * 109.47150 * 329.99996 * 3 2 1 7 7 C 1.37873 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00339 * 179.56117 * 7 2 1 9 9 C 1.50705 * 119.99713 * 359.56063 * 7 2 1 10 10 O 1.42895 * 110.28574 * 57.16255 * 9 7 2 11 11 C 1.54261 * 110.32218 * 179.28945 * 9 7 2 12 12 C 1.54375 * 105.05992 * 118.89645 * 11 9 7 13 13 N 1.48560 * 104.59477 * 23.85072 * 12 11 9 14 14 C 1.46903 * 111.00271 * 200.95777 * 13 12 11 15 15 C 1.53002 * 117.50111 * 257.58672 * 14 13 12 16 16 C 1.52999 * 117.50139 * 188.96240 * 14 13 12 17 17 C 1.48718 * 104.29160 * 320.57187 * 13 12 11 18 18 H 0.97009 * 120.00001 * 175.50145 * 1 2 3 19 19 H 0.96698 * 114.00405 * 55.49816 * 10 9 7 20 20 H 1.09001 * 110.31947 * 237.79192 * 11 9 7 21 21 H 1.09004 * 110.32352 * 0.02562 * 11 9 7 22 22 H 1.09000 * 110.41714 * 142.62876 * 12 11 9 23 23 H 1.08999 * 110.41200 * 265.07631 * 12 11 9 24 24 H 1.09004 * 115.54476 * 43.28861 * 14 13 12 25 25 H 1.08994 * 117.49595 * 359.97438 * 15 14 13 26 26 H 1.09000 * 117.49874 * 145.02021 * 15 14 13 27 27 H 1.09000 * 117.49600 * 214.98414 * 16 14 13 28 28 H 1.08998 * 117.49894 * 359.97438 * 16 14 13 29 29 H 1.09001 * 110.39116 * 280.64517 * 17 13 12 30 30 H 1.08994 * 110.51290 * 158.14502 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 -0.0066 9 6 1.2511 -2.4991 0.0111 10 8 0.3665 -2.5696 -1.1089 11 6 2.2359 -3.6864 -0.0083 12 6 1.9602 -4.4575 1.3004 13 7 0.5645 -4.0977 1.6600 14 6 0.3122 -4.3302 3.0885 15 6 -0.4723 -5.5866 3.4720 16 6 -1.1319 -4.2102 3.5796 17 6 0.4612 -2.6515 1.3288 18 1 -0.4850 -0.8375 -0.0659 19 1 0.8023 -2.4436 -1.9629 20 1 2.0432 -4.3239 -0.8712 21 1 3.2642 -3.3251 -0.0250 22 1 2.0451 -5.5314 1.1340 23 1 2.6488 -4.1375 2.0824 24 1 1.1026 -4.0040 3.7645 25 1 -0.8015 -6.2403 2.6644 26 1 -0.1981 -6.0872 4.4006 27 1 -1.2915 -3.8053 4.5789 28 1 -1.8947 -3.9583 2.8429 29 1 0.9143 -2.0484 2.1156 30 1 -0.5806 -2.3667 1.1825 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = -46.144425 kcal Electronic energy + Delta-G solvation = -13069.923591 eV Core-core repulsion = 10864.740128 eV Total energy + Delta-G solvation = -2205.183463 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.37616 -37.96949 -35.46693 -34.28951 -30.69067 -29.23290 -26.39397 -23.30198 -23.19829 -21.57100 -21.20615 -19.48665 -17.90126 -16.86359 -16.11211 -15.72928 -15.51114 -14.95560 -14.49492 -14.25315 -13.80458 -13.47149 -13.21351 -12.64363 -12.42223 -12.39282 -12.15864 -11.99071 -11.84504 -11.40106 -11.21083 -10.91764 -10.56797 -10.11729 -9.46286 -8.53197 -6.42254 1.52137 1.59637 1.77705 2.54841 2.78206 2.97860 3.18440 3.69598 3.88783 3.94490 4.03319 4.19142 4.25763 4.39267 4.58299 4.70867 4.72901 4.82877 4.91186 4.98189 5.09215 5.19254 5.26887 5.42248 5.66235 5.95674 6.13691 6.24927 6.63781 7.22003 7.52735 8.81635 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045126 B = 0.011347 C = 0.010502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.340773 B = 2467.047653 C = 2665.467603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 1.112 2.888 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.285 1.285 7 C -0.650 4.650 8 H 0.049 0.951 9 C 0.218 3.782 10 O -0.586 6.586 11 C -0.137 4.137 12 C 0.047 3.953 13 N -0.495 5.495 14 C -0.036 4.036 15 C -0.135 4.135 16 C -0.174 4.174 17 C 0.082 3.918 18 H 0.276 0.724 19 H 0.366 0.634 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.094 0.906 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -7.764 5.120 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.215 4.215 3 Si 0.935 3.065 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.211 1.211 7 C -0.688 4.688 8 H 0.067 0.933 9 C 0.178 3.822 10 O -0.392 6.392 11 C -0.176 4.176 12 C -0.081 4.081 13 N -0.220 5.220 14 C -0.145 4.145 15 C -0.172 4.172 16 C -0.211 4.211 17 C -0.046 4.046 18 H 0.089 0.911 19 H 0.212 0.788 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.113 0.887 23 H 0.060 0.940 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.043 0.957 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.845 -6.595 5.376 8.706 hybrid contribution 1.015 -0.816 -0.157 1.312 sum 2.860 -7.411 5.218 9.505 Atomic orbital electron populations 1.70717 1.07888 1.32366 1.44876 1.27134 0.96570 1.05971 0.91831 0.83008 0.74295 0.71696 0.77527 1.20262 1.19508 1.21065 1.22806 0.94160 0.93137 1.58648 0.93278 1.19727 0.86260 0.92568 0.83599 1.86354 1.40646 1.95142 1.17061 1.22931 0.99768 0.97068 0.97803 1.22972 0.88443 1.00502 0.96169 1.65257 1.24475 1.16502 1.15749 1.22755 0.96028 1.06298 0.89404 1.23051 1.01058 0.89885 1.03228 1.23006 0.94114 1.01687 1.02324 1.22708 0.98516 0.87256 0.96079 0.91141 0.78778 0.91310 0.91624 0.88742 0.94030 0.89670 0.88677 0.85922 0.86935 0.90331 0.95702 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.26 13.30 21.45 0.29 -55.98 16 2 C -0.01 -0.68 5.28 84.65 0.45 -0.23 16 3 Si 1.11 49.68 29.90 68.60 2.05 51.73 16 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.65 -35.87 8.04 25.60 0.21 -35.67 16 8 H 0.05 2.67 7.36 -2.91 -0.02 2.65 16 9 C 0.22 11.07 0.91 -10.64 -0.01 11.06 16 10 O -0.59 -30.62 11.36 -148.98 -1.69 -32.31 16 11 C -0.14 -5.76 6.44 31.49 0.20 -5.56 16 12 C 0.05 1.74 6.50 86.45 0.56 2.30 16 13 N -0.50 -20.36 5.51 -855.90 -4.72 -25.08 16 14 C -0.04 -1.21 4.90 44.92 0.22 -0.99 16 15 C -0.13 -3.51 10.46 30.60 0.32 -3.19 16 16 C -0.17 -5.25 10.33 30.59 0.32 -4.94 16 17 C 0.08 4.11 4.80 86.42 0.41 4.53 16 18 H 0.28 17.34 4.89 -92.70 -0.45 16.88 16 19 H 0.37 17.08 9.05 -74.06 -0.67 16.41 16 20 H 0.07 2.70 7.98 -2.39 -0.02 2.68 16 21 H 0.07 2.69 7.42 -2.39 -0.02 2.68 16 22 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 23 H 0.04 1.49 7.90 -2.39 -0.02 1.47 16 24 H 0.09 2.80 8.01 -2.39 -0.02 2.78 16 25 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.02 1.32 7.71 -2.39 -0.02 1.30 16 30 H 0.04 2.31 7.06 -2.39 -0.02 2.29 16 Total: -1.00 -64.69 247.15 -0.63 -65.32 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.77 Total: 29.00 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 2.68 Total: -32.68 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -4.43 Total: -81.06 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.69 Total: -32.31 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.73 kcal Total: -64.69 -0.63 -65.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.174 kcal (2) G-P(sol) polarization free energy of solvation -64.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds