Wall clock time and date at job start Mon Mar 30 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99540 * 2 1 4 4 H 1.48501 * 109.47050 * 271.72869 * 3 2 1 5 5 H 1.48500 * 109.47353 * 31.73478 * 3 2 1 6 6 H 1.48507 * 109.46658 * 151.72983 * 3 2 1 7 7 C 1.37871 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 332.50489 * 7 2 1 9 9 C 1.50697 * 120.00040 * 152.50101 * 7 2 1 10 10 O 1.42901 * 109.42956 * 359.85700 * 9 7 2 11 11 C 1.53133 * 109.42787 * 119.75307 * 9 7 2 12 12 C 1.53714 * 108.88714 * 66.06368 * 11 9 7 13 13 H 1.08995 * 112.61724 * 188.04835 * 12 11 9 14 14 C 1.54605 * 107.80534 * 312.38618 * 12 11 9 15 15 C 1.54289 * 104.94455 * 88.62265 * 14 12 11 16 16 C 1.54610 * 104.83723 * 359.93177 * 15 14 12 17 17 H 1.09005 * 112.21592 * 146.86867 * 16 15 14 18 18 C 1.53710 * 107.80943 * 270.82834 * 16 15 14 19 19 N 1.48719 * 104.22281 * 25.18784 * 16 15 14 20 20 H 0.96997 * 120.00192 * 0.02562 * 1 2 3 21 21 H 0.96705 * 113.99847 * 298.54869 * 10 9 7 22 22 H 1.09002 * 109.57094 * 306.24015 * 11 9 7 23 23 H 1.09002 * 109.56889 * 185.88001 * 11 9 7 24 24 H 1.08998 * 110.36834 * 329.71855 * 14 12 11 25 25 H 1.09007 * 110.36263 * 207.51748 * 14 12 11 26 26 H 1.08998 * 110.36251 * 118.77309 * 15 14 12 27 27 H 1.09000 * 110.36488 * 240.98699 * 15 14 12 28 28 H 1.09001 * 109.56442 * 167.44819 * 18 16 15 29 29 H 1.08996 * 109.56653 * 287.79981 * 18 16 15 30 30 H 1.00899 * 110.99794 * 199.28514 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4599 2.0676 -1.3994 5 1 1.4653 2.6418 0.7364 6 1 3.5645 1.4299 0.6632 7 6 2.0046 -1.1940 0.0005 8 1 1.5561 -2.0763 0.4327 9 6 3.3839 -1.2679 -0.6020 10 8 3.7516 0.0174 -1.1068 11 6 4.3865 -1.6993 0.4721 12 6 4.0686 -3.1413 0.8991 13 1 4.6554 -3.4627 1.7595 14 6 2.5477 -3.2321 1.1619 15 6 1.9288 -3.5936 -0.2044 16 6 3.1314 -3.6872 -1.1716 17 1 2.9802 -4.4396 -1.9457 18 6 3.3695 -2.2883 -1.7624 19 7 4.2848 -4.0105 -0.2902 20 1 -0.4850 0.8400 -0.0004 21 1 3.1712 0.3457 -1.8071 22 1 4.3056 -1.0370 1.3340 23 1 5.3975 -1.6529 0.0674 24 1 2.1649 -2.2727 1.5099 25 1 2.3350 -4.0122 1.8929 26 1 1.4136 -4.5524 -0.1457 27 1 1.2401 -2.8128 -0.5273 28 1 4.3341 -2.2656 -2.2694 29 1 2.5766 -2.0519 -2.4719 30 1 5.1590 -3.7920 -0.7440 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877996.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:41 Heat of formation + Delta-G solvation = 31.944931 kcal Electronic energy + Delta-G solvation = -13949.841739 eV Core-core repulsion = 11748.044485 eV Total energy + Delta-G solvation = -2201.797254 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.42967 -35.82195 -32.57475 -30.52984 -30.31390 -29.50519 -25.12289 -23.26939 -21.08452 -19.47147 -18.84295 -17.70493 -16.21793 -15.53113 -14.34981 -13.85738 -13.00777 -12.89120 -12.83663 -12.53588 -11.96631 -11.77646 -11.47499 -11.09471 -10.96465 -10.54532 -10.51553 -10.07384 -9.73180 -9.59310 -9.34750 -8.61683 -8.45085 -7.83369 -7.65627 -6.13256 -4.06810 3.36463 3.56655 3.78570 4.53163 4.94276 4.98638 5.19574 5.54604 5.67484 5.84590 5.91856 6.10704 6.23328 6.29480 6.33188 6.48986 6.53242 6.71467 6.83656 6.96348 7.00015 7.16251 7.27641 7.34930 7.65132 7.70632 7.93709 8.16981 8.63723 8.83283 9.49486 10.84919 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046122 B = 0.018143 C = 0.016199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.942919 B = 1542.922123 C = 1728.069245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.933 3.067 4 H -0.305 1.305 5 H -0.331 1.331 6 H -0.280 1.280 7 C -0.632 4.632 8 H 0.174 0.826 9 C 0.226 3.774 10 O -0.565 6.565 11 C -0.125 4.125 12 C 0.075 3.925 13 H 0.083 0.917 14 C -0.142 4.142 15 C -0.145 4.145 16 C 0.076 3.924 17 H 0.078 0.922 18 C -0.161 4.161 19 N -0.667 5.667 20 H 0.264 0.736 21 H 0.368 0.632 22 H 0.065 0.935 23 H 0.037 0.963 24 H 0.136 0.864 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.145 0.855 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -4.155 -1.196 6.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.771 3.229 4 H -0.234 1.234 5 H -0.264 1.264 6 H -0.207 1.207 7 C -0.666 4.666 8 H 0.190 0.810 9 C 0.187 3.813 10 O -0.374 6.374 11 C -0.164 4.164 12 C -0.035 4.035 13 H 0.101 0.899 14 C -0.179 4.179 15 C -0.181 4.181 16 C -0.034 4.034 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.294 5.294 20 H 0.074 0.926 21 H 0.217 0.783 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.153 0.847 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.162 0.838 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.158 -4.832 -0.468 7.083 hybrid contribution 0.437 1.996 -0.883 2.226 sum 5.595 -2.836 -1.351 6.417 Atomic orbital electron populations 1.70110 1.06954 1.27750 1.45829 1.25270 0.94601 0.99932 0.93642 0.85989 0.78934 0.81437 0.76534 1.23425 1.26400 1.20704 1.23819 0.99120 1.01009 1.42612 0.80995 1.19552 0.94026 0.78588 0.89142 1.86168 1.58623 1.36717 1.55904 1.22321 0.97110 0.97114 0.99837 1.22668 0.97735 0.89933 0.93127 0.89889 1.23424 0.93716 1.03835 0.96956 1.23511 0.98502 1.01616 0.94489 1.22585 0.91916 0.93977 0.94908 0.90414 1.23269 0.99411 0.97865 0.99526 1.64061 1.04488 1.53469 1.07428 0.92627 0.78323 0.91623 0.94393 0.84665 0.94567 0.94718 0.83828 0.94426 0.91715 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.45 13.96 55.43 0.77 -23.67 16 2 C 0.07 1.87 5.34 -17.82 -0.10 1.77 16 3 Si 0.93 23.21 24.47 -169.99 -4.16 19.05 16 4 H -0.30 -7.33 6.61 56.52 0.37 -6.95 16 5 H -0.33 -8.56 7.11 56.52 0.40 -8.16 16 6 H -0.28 -7.28 6.86 56.52 0.39 -6.89 16 7 C -0.63 -15.57 4.92 -34.44 -0.17 -15.74 16 8 H 0.17 4.22 1.96 -103.06 -0.20 4.02 16 9 C 0.23 5.05 0.98 -90.90 -0.09 4.96 16 10 O -0.56 -13.13 8.73 -35.23 -0.31 -13.44 16 11 C -0.12 -2.58 4.87 -26.29 -0.13 -2.70 16 12 C 0.08 1.41 4.60 -65.40 -0.30 1.11 16 13 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 14 C -0.14 -2.84 5.67 -25.21 -0.14 -2.99 16 15 C -0.14 -2.91 5.67 -25.21 -0.14 -3.05 16 16 C 0.08 1.42 4.55 -65.49 -0.30 1.12 16 17 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.16 -3.20 4.93 -25.56 -0.13 -3.33 16 19 N -0.67 -11.98 7.40 -94.55 -0.70 -12.68 16 20 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 21 H 0.37 8.13 6.57 45.56 0.30 8.43 16 22 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 23 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 24 H 0.14 3.04 4.83 -51.93 -0.25 2.79 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.14 3.31 4.84 -51.93 -0.25 3.06 16 28 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.32 5.40 8.27 -39.29 -0.32 5.07 16 LS Contribution 216.37 15.07 3.26 3.26 Total: -1.00 -27.37 216.37 -5.90 -33.27 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.28 Total: 13.06 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.49 Total: -18.84 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.07 Total: -36.35 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.31 Total: -13.44 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.16 Total: 19.05 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -27.37 -5.90 -33.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877996.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.218 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds