Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99895 * 2 1 4 4 H 1.08997 * 109.47335 * 30.00404 * 3 2 1 5 5 C 1.53001 * 109.47236 * 269.99845 * 3 2 1 6 6 C 1.50709 * 109.47183 * 150.00047 * 3 2 1 7 7 N 1.31399 * 125.15445 * 45.02266 * 6 3 2 8 8 N 1.40460 * 107.17590 * 180.02562 * 7 6 3 9 9 H 0.96995 * 127.01275 * 179.97438 * 8 7 6 10 10 C 1.37027 * 105.96868 * 0.02562 * 8 7 6 11 11 C 1.40365 * 126.31591 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00339 * 172.70213 * 11 10 8 13 13 C 1.40275 * 119.99946 * 352.69523 * 11 10 8 14 14 N 1.30642 * 119.99949 * 6.09666 * 13 11 10 15 15 Si 1.86796 * 120.00141 * 186.08755 * 13 11 10 16 16 H 1.48505 * 109.46954 * 94.97755 * 15 13 11 17 17 H 1.48493 * 109.47784 * 214.97755 * 15 13 11 18 18 H 1.48502 * 109.47084 * 334.98164 * 15 13 11 19 19 N 1.32224 * 125.15710 * 225.33392 * 6 3 2 20 20 H 1.08999 * 109.46877 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47291 * 299.99976 * 1 2 3 22 22 H 1.08997 * 109.47123 * 60.00461 * 1 2 3 23 23 H 1.09001 * 109.47254 * 180.02562 * 5 3 2 24 24 H 1.09003 * 109.47046 * 299.99909 * 5 3 2 25 25 H 1.08993 * 109.47055 * 59.99852 * 5 3 2 26 26 H 0.97003 * 120.00031 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 4.2618 0.3453 0.5355 8 7 5.3358 0.6704 1.3803 9 1 6.1687 0.1833 1.4798 10 6 4.9665 1.8156 2.0359 11 6 5.7295 2.5124 2.9859 12 1 5.3904 3.4694 3.3541 13 6 6.9322 1.9657 3.4573 14 7 7.4029 0.8683 2.9273 15 14 7.8611 2.8070 4.8425 16 1 7.4833 2.1886 6.1388 17 1 9.3217 2.6498 4.6262 18 1 7.5164 4.2513 4.8640 19 7 3.7496 2.1430 1.6085 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 2.6614 2.7669 -1.4425 24 1 2.8830 1.0774 -1.9563 25 1 1.2569 1.8014 -1.9563 26 1 8.2348 0.4904 3.2530 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086591939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = -8.703380 kcal Electronic energy + Delta-G solvation = -12262.361063 eV Core-core repulsion = 9955.260822 eV Total energy + Delta-G solvation = -2307.100240 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.86682 -39.01466 -35.92582 -33.33071 -32.14587 -30.76339 -28.05966 -27.45967 -24.74794 -22.52680 -20.60387 -19.76113 -17.69233 -17.22078 -16.82161 -16.23208 -16.14489 -15.33330 -14.90204 -14.08745 -13.72811 -13.44654 -13.38742 -13.14383 -12.91491 -12.48688 -12.06729 -11.89633 -11.84402 -11.41851 -10.68332 -10.34893 -10.31256 -10.03210 -9.01011 -6.92895 1.14310 1.41944 1.60378 1.62876 2.16250 2.20709 2.66604 2.88599 3.25501 3.77464 4.09209 4.24959 4.54413 4.60906 4.69232 4.81867 4.85058 4.91502 5.06280 5.24130 5.57379 5.98501 6.15125 6.30490 6.48010 6.56499 7.29465 7.98259 8.14040 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.080755 B = 0.008282 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.642622 B = 3380.186815 C = 3438.624279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.189 3.811 4 H 0.088 0.912 5 C -0.150 4.150 6 C 0.204 3.796 7 N -0.409 5.409 8 N -0.522 5.522 9 H 0.437 0.563 10 C 0.382 3.618 11 C -0.457 4.457 12 H 0.106 0.894 13 C 0.037 3.963 14 N -0.849 5.849 15 Si 1.026 2.974 16 H -0.260 1.260 17 H -0.261 1.261 18 H -0.252 1.252 19 N -0.653 5.653 20 H 0.099 0.901 21 H 0.045 0.955 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 1.682 -1.296 5.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.129 3.871 4 H 0.106 0.894 5 C -0.209 4.209 6 C -0.080 4.080 7 N -0.245 5.245 8 N -0.249 5.249 9 H 0.291 0.709 10 C 0.130 3.870 11 C -0.498 4.498 12 H 0.124 0.876 13 C -0.179 4.179 14 N -0.481 5.481 15 Si 0.844 3.156 16 H -0.185 1.185 17 H -0.185 1.185 18 H -0.175 1.175 19 N -0.393 5.393 20 H 0.117 0.883 21 H 0.064 0.936 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.918 0.999 -1.741 5.311 hybrid contribution 0.978 -0.073 0.625 1.163 sum -3.940 0.926 -1.116 4.198 Atomic orbital electron populations 1.23058 0.78940 1.04023 1.01232 1.87973 1.21900 1.27300 1.95212 1.20031 0.86665 0.85146 0.95242 0.89369 1.22089 1.03552 1.01131 0.94101 1.24115 0.97089 0.90951 0.95837 1.77593 0.99197 1.26856 1.20836 1.48715 1.17240 1.24386 1.34511 0.70921 1.21361 0.89375 0.84929 0.91355 1.19057 1.04310 1.06656 1.19804 0.87580 1.27171 0.96562 0.94500 0.99633 1.68797 1.21027 1.19159 1.39142 0.84512 0.76560 0.79168 0.75344 1.18502 1.18481 1.17542 1.70670 1.13156 1.33471 1.22041 0.88250 0.93611 0.91642 0.91708 0.93222 0.88399 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.82 113.37 1.23 1.83 15 2 O -0.41 -15.84 10.33 -148.98 -1.54 -17.38 15 3 C 0.19 7.70 3.27 29.85 0.10 7.79 15 4 H 0.09 3.27 7.79 -2.39 -0.02 3.25 15 5 C -0.15 -5.02 9.51 71.98 0.68 -4.34 15 6 C 0.20 10.90 6.97 138.74 0.97 11.87 15 7 N -0.41 -23.41 12.79 -51.54 -0.66 -24.07 15 8 N -0.52 -30.40 7.16 -55.51 -0.40 -30.80 15 9 H 0.44 24.63 6.43 -213.09 -1.37 23.27 15 10 C 0.38 22.52 7.66 133.83 1.03 23.55 15 11 C -0.46 -24.73 9.47 23.28 0.22 -24.51 15 12 H 0.11 5.49 7.86 -2.91 -0.02 5.46 15 13 C 0.04 1.76 5.49 85.37 0.47 2.23 15 14 N -0.85 -41.41 10.77 21.88 0.24 -41.17 15 15 Si 1.03 35.47 29.57 68.60 2.03 37.50 15 16 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 17 H -0.26 -8.37 7.11 99.48 0.71 -7.66 15 18 H -0.25 -8.46 7.11 99.48 0.71 -7.76 15 19 N -0.65 -37.65 11.24 -185.90 -2.09 -39.74 15 20 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 21 H 0.05 1.12 8.08 -2.39 -0.02 1.10 15 22 H 0.07 1.32 7.87 -2.39 -0.02 1.31 15 23 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.10 2.40 7.87 -2.39 -0.02 2.39 15 26 H 0.31 13.12 8.29 -92.71 -0.77 12.35 15 Total: -1.00 -67.58 234.98 2.10 -65.49 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.17 Total: 31.76 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 4.69 Total: 18.42 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -2.91 Total: -135.79 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.54 Total: -17.38 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -67.58 2.10 -65.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086591939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.784 kcal (2) G-P(sol) polarization free energy of solvation -67.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds