Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48493 * 109.47287 * 270.00248 * 3 2 1 5 5 H 1.48502 * 109.47001 * 30.00033 * 3 2 1 6 6 H 1.48500 * 109.47029 * 149.99913 * 3 2 1 7 7 C 1.37878 * 119.99377 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99111 * 173.02314 * 7 2 1 9 9 C 1.50693 * 120.00421 * 353.02119 * 7 2 1 10 10 C 1.53007 * 115.54798 * 84.92825 * 9 7 2 11 11 N 1.46898 * 109.47102 * 65.17000 * 10 9 7 12 12 C 1.46898 * 110.99785 * 174.69264 * 11 10 9 13 13 C 1.54035 * 113.81302 * 251.18163 * 12 11 10 14 14 O 1.44178 * 85.52238 * 223.19529 * 13 12 11 15 15 C 1.44182 * 93.33396 * 24.19446 * 14 13 12 16 16 C 1.52997 * 117.50074 * 230.59471 * 9 7 2 17 17 C 1.53001 * 117.50112 * 299.25973 * 9 7 2 18 18 H 0.97002 * 119.99651 * 5.03887 * 1 2 3 19 19 H 1.08995 * 109.46746 * 305.17107 * 10 9 7 20 20 H 1.08996 * 109.47202 * 185.16920 * 10 9 7 21 21 H 1.00907 * 110.99695 * 298.64274 * 11 10 9 22 22 H 1.08999 * 113.00302 * 23.17128 * 12 11 10 23 23 H 1.08992 * 113.86874 * 337.34949 * 13 12 11 24 24 H 1.09003 * 113.86027 * 109.05341 * 13 12 11 25 25 H 1.09003 * 113.86488 * 221.65368 * 15 14 13 26 26 H 1.09004 * 113.86278 * 89.95517 * 15 14 13 27 27 H 1.09003 * 117.49975 * 215.00486 * 16 9 7 28 28 H 1.09000 * 117.49767 * 0.02894 * 16 9 7 29 29 H 1.08998 * 117.49429 * 359.97285 * 17 9 7 30 30 H 1.09001 * 117.49762 * 144.97266 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0784 -1.1975 -0.1142 9 6 1.2593 -2.4944 0.1574 10 6 0.6830 -3.0854 -1.1309 11 7 1.7812 -3.4608 -2.0314 12 6 1.2712 -4.1471 -3.2259 13 6 1.5922 -5.6532 -3.2624 14 8 1.9178 -5.4351 -4.6499 15 6 2.1979 -4.0347 -4.4511 16 6 1.7636 -3.4731 1.2198 17 6 0.4622 -2.6997 1.4472 18 1 -0.4850 0.8368 -0.0738 19 1 0.0499 -2.3445 -1.6190 20 1 0.0908 -3.9688 -0.8922 21 1 2.3322 -2.6545 -2.2853 22 1 0.2285 -3.9121 -3.4396 23 1 2.4468 -5.9370 -2.6482 24 1 0.7233 -6.2931 -3.1087 25 1 1.8095 -3.3910 -5.2403 26 1 3.2375 -3.8243 -4.1999 27 1 1.6848 -4.5380 1.0010 28 1 2.6341 -3.1763 1.8048 29 1 0.4772 -1.8944 2.1816 30 1 -0.4729 -3.2555 1.3778 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087195488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = -8.441603 kcal Electronic energy + Delta-G solvation = -12622.179976 eV Core-core repulsion = 10418.631430 eV Total energy + Delta-G solvation = -2203.548546 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.18291 -38.57788 -35.08035 -33.94275 -29.45184 -27.52752 -27.43927 -25.35934 -22.83562 -21.38102 -20.76074 -17.97792 -17.40784 -17.16068 -16.72295 -16.57270 -15.70685 -15.36531 -14.50934 -14.30188 -13.58868 -13.53168 -13.04334 -12.90752 -12.82660 -12.34999 -12.12592 -12.04464 -11.88580 -11.24651 -10.71073 -10.64855 -10.36671 -9.93368 -9.21681 -8.07872 -6.19029 1.41157 1.45151 1.53544 2.43630 2.79060 3.19805 3.27798 3.41574 3.75395 4.10834 4.36031 4.36475 4.51334 4.62417 4.66395 4.74775 4.84552 4.98525 5.07114 5.09649 5.15226 5.21199 5.30302 5.68025 5.68724 5.81020 6.29248 6.48675 6.57845 6.90084 7.49298 8.99322 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037877 B = 0.010242 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.060491 B = 2733.092578 C = 3175.098441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.118 3.882 11 N -0.665 5.665 12 C 0.008 3.992 13 C 0.049 3.951 14 O -0.405 6.405 15 C 0.037 3.963 16 C -0.177 4.177 17 C -0.170 4.170 18 H 0.258 0.742 19 H 0.007 0.993 20 H 0.047 0.953 21 H 0.346 0.654 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 -6.046 -5.051 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.011 4.011 11 N -0.298 5.298 12 C -0.103 4.103 13 C -0.028 4.028 14 O -0.323 6.323 15 C -0.040 4.040 16 C -0.214 4.214 17 C -0.208 4.208 18 H 0.067 0.933 19 H 0.025 0.975 20 H 0.066 0.934 21 H 0.166 0.834 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.375 -6.675 -4.892 8.610 hybrid contribution -0.342 1.975 -0.109 2.008 sum 2.033 -4.700 -5.000 7.157 Atomic orbital electron populations 1.70100 1.07076 1.27138 1.50311 1.25663 0.95470 1.01767 0.94613 0.85727 0.78756 0.79968 0.78220 1.19996 1.21586 1.19529 1.20692 0.93001 0.90090 1.50280 0.92761 1.18909 0.98171 0.93658 0.86835 1.21240 0.91216 0.95258 0.93388 1.60642 1.22819 1.31913 1.14429 1.24958 0.98774 0.96238 0.90304 1.24224 1.01099 0.96024 0.81441 1.89594 1.89594 1.26072 1.27038 1.24356 0.99968 0.83183 0.96444 1.22852 0.96493 0.96552 1.05535 1.22466 0.93823 1.01401 1.03130 0.93296 0.97504 0.93427 0.83424 0.90942 0.89141 0.88439 0.88059 0.88752 0.89477 0.91004 0.92645 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.67 12.95 21.45 0.28 -50.39 16 2 C 0.03 1.33 5.39 84.65 0.46 1.78 16 3 Si 0.95 42.21 29.55 68.60 2.03 44.24 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.50 -26.24 8.32 25.60 0.21 -26.03 16 8 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 9 C 0.02 1.18 1.56 -52.93 -0.08 1.10 16 10 C 0.12 5.08 5.38 86.31 0.46 5.54 16 11 N -0.67 -24.27 6.54 -524.64 -3.43 -27.70 16 12 C 0.01 0.25 4.38 45.62 0.20 0.45 16 13 C 0.05 1.35 9.02 72.27 0.65 2.01 16 14 O -0.40 -12.02 12.45 -148.98 -1.86 -13.88 16 15 C 0.04 0.99 8.80 72.27 0.64 1.63 16 16 C -0.18 -7.53 9.96 30.62 0.30 -7.23 16 17 C -0.17 -7.94 9.46 30.62 0.29 -7.65 16 18 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 19 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 20 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 21 H 0.35 13.18 8.13 -89.69 -0.73 12.45 16 22 H 0.07 2.28 7.87 -2.39 -0.02 2.26 16 23 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -56.76 258.57 0.54 -56.22 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.39 Total: 19.89 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.13 Total: -28.38 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -3.15 Total: -78.09 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.86 Total: -13.88 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -56.76 0.54 -56.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087195488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.783 kcal (2) G-P(sol) polarization free energy of solvation -56.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds