Wall clock time and date at job start Mon Mar 30 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48495 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46700 * 299.99573 * 3 2 1 6 6 H 1.48499 * 109.47263 * 59.99259 * 3 2 1 7 7 C 1.37879 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99843 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.44590 * 59.29780 * 9 7 2 11 11 C 1.54240 * 110.50446 * 296.72580 * 9 7 2 12 12 C 1.54110 * 104.38230 * 214.62127 * 11 9 7 13 13 N 1.46838 * 107.81311 * 18.57800 * 12 11 9 14 14 C 1.47236 * 111.11803 * 117.71087 * 13 12 11 15 15 C 1.54335 * 107.14023 * 237.68629 * 14 13 12 16 16 C 1.56256 * 103.47703 * 23.08734 * 15 14 13 17 17 C 1.47776 * 109.40112 * 357.36730 * 13 12 11 18 18 H 1.08995 * 111.86495 * 222.90375 * 17 13 12 19 19 H 0.96997 * 120.00715 * 0.02562 * 1 2 3 20 20 H 0.96700 * 114.00311 * 300.70294 * 10 9 7 21 21 H 1.08998 * 110.41998 * 333.35020 * 11 9 7 22 22 H 1.09008 * 110.41971 * 95.80838 * 11 9 7 23 23 H 1.08995 * 109.80073 * 258.98781 * 12 11 9 24 24 H 1.09000 * 109.80703 * 138.17222 * 12 11 9 25 25 H 1.08994 * 109.90270 * 357.06456 * 14 13 12 26 26 H 1.09001 * 109.90292 * 118.31057 * 14 13 12 27 27 H 1.09001 * 110.70772 * 142.03006 * 15 14 13 28 28 H 1.09005 * 110.71021 * 265.10952 * 15 14 13 29 29 H 1.08998 * 111.71472 * 207.49776 * 16 15 14 30 30 H 1.08998 * 110.63983 * 83.48587 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 8 0.4101 -2.5899 -1.1511 11 6 0.4180 -2.6419 1.2906 12 6 0.4596 -4.1493 1.6083 13 7 1.5873 -4.7329 0.8708 14 6 2.5873 -5.2988 1.7916 15 6 3.9284 -4.5950 1.4950 16 6 3.4943 -3.2499 0.8288 17 6 2.2300 -3.6867 0.0484 18 1 2.4753 -4.0489 -0.9499 19 1 -0.4851 0.8400 -0.0004 20 1 -0.2456 -1.8821 -1.2161 21 1 0.8697 -2.0691 2.1005 22 1 -0.6078 -2.3154 1.1189 23 1 -0.4714 -4.6193 1.2914 24 1 0.6022 -4.2974 2.6787 25 1 2.2899 -5.1111 2.8232 26 1 2.6849 -6.3708 1.6200 27 1 4.4804 -4.4132 2.4171 28 1 4.5265 -5.1828 0.7986 29 1 4.2586 -2.8706 0.1506 30 1 3.2462 -2.5078 1.5877 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123427430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:46 Heat of formation + Delta-G solvation = -47.843375 kcal Electronic energy + Delta-G solvation = -13474.548905 eV Core-core repulsion = 11269.291770 eV Total energy + Delta-G solvation = -2205.257135 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.32655 -35.21645 -32.19232 -31.86217 -29.90204 -27.23129 -25.58175 -23.39742 -20.55111 -20.08648 -18.79185 -16.51579 -15.70589 -14.97646 -14.53042 -13.99027 -13.80500 -13.29706 -12.66702 -12.01101 -11.85164 -11.33550 -11.26894 -10.98410 -10.86983 -10.66574 -10.64231 -10.34405 -10.19270 -9.84111 -9.61335 -9.11205 -8.57956 -8.05631 -7.55540 -6.19921 -4.26491 3.20700 3.29720 3.33196 4.29932 4.81621 5.07945 5.24263 5.37240 5.61637 5.85100 5.93192 6.05058 6.13027 6.20228 6.29901 6.42234 6.45621 6.66130 6.76861 6.86609 6.95056 7.21643 7.49190 7.53702 7.75619 7.80442 7.89530 8.20617 8.75325 9.41526 9.58707 10.87565 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045587 B = 0.014181 C = 0.012260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.068244 B = 1974.056514 C = 2283.258068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.250 3.750 10 O -0.587 6.587 11 C -0.140 4.140 12 C 0.042 3.958 13 N -0.527 5.527 14 C 0.043 3.957 15 C -0.147 4.147 16 C -0.123 4.123 17 C 0.084 3.916 18 H 0.084 0.916 19 H 0.266 0.734 20 H 0.379 0.621 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -4.729 3.606 6.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.179 4.179 12 C -0.086 4.086 13 N -0.251 5.251 14 C -0.085 4.085 15 C -0.186 4.186 16 C -0.162 4.162 17 C -0.024 4.024 18 H 0.102 0.898 19 H 0.076 0.924 20 H 0.230 0.770 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.608 -5.571 3.184 7.362 hybrid contribution 0.319 2.111 0.740 2.260 sum 3.927 -3.460 3.924 6.542 Atomic orbital electron populations 1.69687 1.05954 1.27239 1.50836 1.25033 0.94962 0.99421 0.93951 0.86449 0.80150 0.83242 0.77636 1.19668 1.20841 1.21009 1.21820 0.93904 0.90494 1.51006 0.91319 1.19413 0.86291 0.91047 0.82317 1.86127 1.51832 1.54583 1.47021 1.23084 1.02111 0.92239 1.00466 1.22875 0.94415 0.96348 0.94984 1.63904 1.08109 1.32529 1.20521 1.22943 0.91440 0.99030 0.95102 1.23054 0.97343 0.97943 1.00250 1.23234 0.97562 0.95629 0.99732 1.22966 0.93268 0.90010 0.96150 0.89829 0.92448 0.77039 0.92481 0.91146 0.92034 0.94182 0.93406 0.91661 0.91942 0.91946 0.91326 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 10.79 55.43 0.60 -23.49 16 2 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.09 6.99 -34.44 -0.24 -14.33 16 8 H 0.07 1.78 5.89 -52.49 -0.31 1.47 16 9 C 0.25 6.29 0.79 -90.62 -0.07 6.22 16 10 O -0.59 -15.85 13.07 -35.23 -0.46 -16.31 16 11 C -0.14 -3.30 5.22 -25.50 -0.13 -3.44 16 12 C 0.04 0.86 6.92 -3.28 -0.02 0.84 16 13 N -0.53 -10.90 5.52 -222.37 -1.23 -12.13 16 14 C 0.04 0.74 6.92 -2.94 -0.02 0.72 16 15 C -0.15 -2.39 6.97 -24.28 -0.17 -2.56 16 16 C -0.12 -2.42 4.89 -24.00 -0.12 -2.53 16 17 C 0.08 1.88 3.72 -65.74 -0.24 1.63 16 18 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 19 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 20 H 0.38 10.31 7.21 45.56 0.33 10.64 16 21 H 0.06 1.39 7.89 -51.93 -0.41 0.98 16 22 H 0.07 1.75 7.86 -51.92 -0.41 1.34 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.04 0.74 6.90 -51.93 -0.36 0.38 16 25 H 0.05 0.77 6.91 -51.93 -0.36 0.41 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.31 7.75 -51.93 -0.40 0.91 16 30 H 0.08 1.72 6.95 -51.93 -0.36 1.36 16 LS Contribution 234.27 15.07 3.53 3.53 Total: -1.00 -27.43 234.27 -7.22 -34.65 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.53 Total: 9.92 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.11 Total: -11.75 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.63 Total: -35.61 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.46 Total: -16.31 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.43 -7.22 -34.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123427430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.198 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds