Wall clock time and date at job start Mon Mar 30 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48495 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46700 * 299.99573 * 3 2 1 6 6 H 1.48499 * 109.47263 * 59.99259 * 3 2 1 7 7 C 1.37879 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99843 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.44590 * 59.29780 * 9 7 2 11 11 C 1.54240 * 110.50446 * 296.72580 * 9 7 2 12 12 C 1.54110 * 104.38230 * 214.62127 * 11 9 7 13 13 N 1.46838 * 107.81311 * 18.57800 * 12 11 9 14 14 C 1.47236 * 111.11803 * 117.71087 * 13 12 11 15 15 C 1.54335 * 107.14023 * 237.68629 * 14 13 12 16 16 C 1.56256 * 103.47703 * 23.08734 * 15 14 13 17 17 C 1.47776 * 109.40112 * 357.36730 * 13 12 11 18 18 H 1.08995 * 111.86495 * 222.90375 * 17 13 12 19 19 H 0.96997 * 120.00715 * 0.02562 * 1 2 3 20 20 H 0.96700 * 114.00311 * 300.70294 * 10 9 7 21 21 H 1.08998 * 110.41998 * 333.35020 * 11 9 7 22 22 H 1.09008 * 110.41971 * 95.80838 * 11 9 7 23 23 H 1.08995 * 109.80073 * 258.98781 * 12 11 9 24 24 H 1.09000 * 109.80703 * 138.17222 * 12 11 9 25 25 H 1.08994 * 109.90270 * 357.06456 * 14 13 12 26 26 H 1.09001 * 109.90292 * 118.31057 * 14 13 12 27 27 H 1.09001 * 110.70772 * 142.03006 * 15 14 13 28 28 H 1.09005 * 110.71021 * 265.10952 * 15 14 13 29 29 H 1.08998 * 111.71472 * 207.49776 * 16 15 14 30 30 H 1.08998 * 110.63983 * 83.48587 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 8 0.4101 -2.5899 -1.1511 11 6 0.4180 -2.6419 1.2906 12 6 0.4596 -4.1493 1.6083 13 7 1.5873 -4.7329 0.8708 14 6 2.5873 -5.2988 1.7916 15 6 3.9284 -4.5950 1.4950 16 6 3.4943 -3.2499 0.8288 17 6 2.2300 -3.6867 0.0484 18 1 2.4753 -4.0489 -0.9499 19 1 -0.4851 0.8400 -0.0004 20 1 -0.2456 -1.8821 -1.2161 21 1 0.8697 -2.0691 2.1005 22 1 -0.6078 -2.3154 1.1189 23 1 -0.4714 -4.6193 1.2914 24 1 0.6022 -4.2974 2.6787 25 1 2.2899 -5.1111 2.8232 26 1 2.6849 -6.3708 1.6200 27 1 4.4804 -4.4132 2.4171 28 1 4.5265 -5.1828 0.7986 29 1 4.2586 -2.8706 0.1506 30 1 3.2462 -2.5078 1.5877 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123427430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:45 Heat of formation + Delta-G solvation = -68.220199 kcal Electronic energy + Delta-G solvation = -13475.432510 eV Core-core repulsion = 11269.291770 eV Total energy + Delta-G solvation = -2206.140740 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.00626 -37.10441 -34.17782 -33.56117 -31.66441 -28.86651 -27.45018 -25.16103 -21.99552 -21.89180 -20.55583 -18.50640 -17.37855 -16.95413 -16.18643 -15.75964 -15.51164 -14.86512 -14.40964 -13.76139 -13.56573 -13.24384 -13.09526 -12.78218 -12.56579 -12.37363 -12.23792 -12.09879 -11.76158 -11.54900 -11.27064 -11.02705 -10.57872 -10.07943 -9.15609 -8.20287 -6.33426 1.38344 1.42084 1.52121 2.38227 3.05084 3.26219 3.77574 3.87381 3.97995 4.30010 4.32683 4.44155 4.58880 4.65166 4.74100 4.96585 5.02564 5.04641 5.06640 5.22234 5.33971 5.41296 5.56263 5.64741 5.80405 6.00967 6.26948 6.36441 6.72490 7.36563 7.47598 8.86140 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045587 B = 0.014181 C = 0.012260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.068244 B = 1974.056514 C = 2283.258068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.231 3.769 10 O -0.600 6.600 11 C -0.131 4.131 12 C 0.048 3.952 13 N -0.538 5.538 14 C 0.038 3.962 15 C -0.134 4.134 16 C -0.120 4.120 17 C 0.082 3.918 18 H 0.068 0.932 19 H 0.267 0.733 20 H 0.373 0.627 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -5.397 4.584 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.588 4.588 8 H 0.087 0.913 9 C 0.191 3.809 10 O -0.408 6.408 11 C -0.170 4.170 12 C -0.080 4.080 13 N -0.262 5.262 14 C -0.089 4.089 15 C -0.173 4.173 16 C -0.159 4.159 17 C -0.026 4.026 18 H 0.086 0.914 19 H 0.076 0.924 20 H 0.222 0.778 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.947 -6.258 4.170 9.001 hybrid contribution -0.117 2.297 0.417 2.338 sum 4.830 -3.960 4.587 7.749 Atomic orbital electron populations 1.69782 1.06983 1.27899 1.51167 1.25748 0.95768 1.02370 0.93730 0.85501 0.79143 0.79466 0.77469 1.19118 1.20842 1.20652 1.22074 0.94090 0.91442 1.51149 0.91308 1.19751 0.86784 0.92161 0.82176 1.86125 1.52007 1.54365 1.48333 1.22885 1.00245 0.94476 0.99393 1.22825 0.94826 0.93823 0.96543 1.63876 1.09026 1.31662 1.21592 1.23114 0.90776 1.00030 0.94996 1.23013 0.97333 0.95468 1.01436 1.23119 0.96365 0.97304 0.99125 1.22890 0.93907 0.89470 0.96360 0.91411 0.92387 0.77753 0.93739 0.93348 0.91988 0.91601 0.92113 0.89493 0.89381 0.90372 0.91249 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.99 10.79 21.45 0.23 -49.76 16 2 C 0.02 1.24 5.27 84.65 0.45 1.69 16 3 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -29.19 6.99 25.60 0.18 -29.01 16 8 H 0.07 3.57 5.89 -2.91 -0.02 3.55 16 9 C 0.23 11.76 0.79 -10.79 -0.01 11.75 16 10 O -0.60 -33.20 13.07 -148.98 -1.95 -35.14 16 11 C -0.13 -6.23 5.22 31.39 0.16 -6.06 16 12 C 0.05 1.91 6.92 86.69 0.60 2.51 16 13 N -0.54 -21.25 5.52 -857.45 -4.73 -25.98 16 14 C 0.04 1.17 6.92 86.69 0.60 1.77 16 15 C -0.13 -3.86 6.97 32.18 0.22 -3.64 16 16 C -0.12 -4.55 4.89 32.37 0.16 -4.39 16 17 C 0.08 3.62 3.72 45.71 0.17 3.79 16 18 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 19 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 20 H 0.37 20.99 7.21 -74.06 -0.53 20.46 16 21 H 0.04 2.17 7.89 -2.39 -0.02 2.15 16 22 H 0.05 2.47 7.86 -2.38 -0.02 2.45 16 23 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.07 2.27 6.90 -2.39 -0.02 2.26 16 25 H 0.06 1.71 6.91 -2.39 -0.02 1.69 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.07 2.57 7.75 -2.39 -0.02 2.55 16 30 H 0.06 2.61 6.95 -2.39 -0.02 2.59 16 Total: -1.00 -58.00 234.27 -1.29 -59.29 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.60 Total: 28.92 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 2.53 Total: -21.60 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -4.50 Total: -75.74 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.95 Total: -35.14 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -58.00 -1.29 -59.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123427430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -57.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds