Wall clock time and date at job start Mon Mar 30 2020 02:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99902 * 2 1 4 4 H 1.48500 * 109.46974 * 265.61320 * 3 2 1 5 5 H 1.48495 * 109.47251 * 25.61473 * 3 2 1 6 6 H 1.48503 * 109.46778 * 145.61402 * 3 2 1 7 7 C 1.37877 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99784 * 352.50947 * 7 2 1 9 9 C 1.50701 * 120.00188 * 172.50742 * 7 2 1 10 10 O 1.42900 * 110.32386 * 333.11788 * 9 7 2 11 11 C 1.56328 * 111.42895 * 210.68511 * 9 7 2 12 12 C 1.55000 * 103.20712 * 220.04497 * 11 9 7 13 13 N 1.48267 * 103.02401 * 37.46757 * 12 11 9 14 14 C 1.47239 * 110.66244 * 204.29567 * 13 12 11 15 15 C 1.53754 * 106.55147 * 85.03916 * 14 13 12 16 16 C 1.53871 * 105.65440 * 18.14209 * 15 14 13 17 17 C 1.48433 * 105.72073 * 319.69744 * 13 12 11 18 18 H 1.09002 * 111.60672 * 149.57849 * 17 13 12 19 19 H 0.97006 * 120.00205 * 359.97438 * 1 2 3 20 20 H 0.96702 * 114.00358 * 296.26735 * 10 9 7 21 21 H 1.08994 * 110.75897 * 101.51317 * 11 9 7 22 22 H 1.09001 * 110.43374 * 338.41574 * 11 9 7 23 23 H 1.08999 * 110.70520 * 279.08470 * 12 11 9 24 24 H 1.09001 * 110.70010 * 155.85504 * 12 11 9 25 25 H 1.08995 * 110.04255 * 325.76334 * 14 13 12 26 26 H 1.09002 * 110.03914 * 204.31072 * 14 13 12 27 27 H 1.09001 * 110.21554 * 259.09189 * 15 14 13 28 28 H 1.09007 * 110.21275 * 137.18504 * 15 14 13 29 29 H 1.09004 * 110.16202 * 240.47876 * 16 15 14 30 30 H 1.08998 * 110.23231 * 118.73086 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5893 1.9929 -1.3960 5 1 1.4033 2.6777 0.6053 6 1 3.4972 1.4687 0.7907 7 6 2.0045 -1.1940 -0.0005 8 1 1.4714 -2.1254 0.1210 9 6 3.5019 -1.1995 -0.1707 10 8 3.9222 -0.0479 -0.9049 11 6 3.9901 -2.4985 -0.8905 12 6 5.2883 -2.8609 -0.1250 13 7 4.9581 -2.5106 1.2773 14 6 6.1830 -2.2330 2.0457 15 6 6.5313 -0.7563 1.7962 16 6 5.2422 -0.1108 1.2584 17 6 4.1961 -1.2388 1.2055 18 1 3.4760 -1.1558 2.0196 19 1 -0.4851 0.8401 0.0004 20 1 3.5878 -0.0158 -1.8117 21 1 4.2041 -2.3010 -1.9408 22 1 3.2488 -3.2912 -0.7893 23 1 6.1267 -2.2642 -0.4841 24 1 5.5046 -3.9254 -0.2157 25 1 6.9948 -2.8721 1.6984 26 1 6.0037 -2.4002 3.1078 27 1 7.3288 -0.6771 1.0574 28 1 6.8317 -0.2775 2.7283 29 1 5.4119 0.2915 0.2596 30 1 4.9083 0.6802 1.9298 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123427649.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:48 Heat of formation + Delta-G solvation = -39.351406 kcal Electronic energy + Delta-G solvation = -13600.941797 eV Core-core repulsion = 11396.052902 eV Total energy + Delta-G solvation = -2204.888895 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.68789 -35.86386 -32.48696 -32.16944 -29.64828 -27.51282 -26.40293 -23.22511 -20.48792 -20.25508 -18.96487 -17.21067 -15.57385 -15.33261 -15.10169 -14.50983 -13.78165 -13.23121 -12.83255 -12.65168 -12.19241 -11.80991 -11.48050 -11.07256 -10.95891 -10.71238 -10.60379 -10.42404 -10.03689 -9.94046 -9.55590 -9.12724 -8.47267 -8.31928 -7.97796 -6.08981 -4.17733 3.49595 3.59774 3.77866 4.56933 4.61594 5.03901 5.15244 5.23167 5.49405 5.49877 5.69257 5.75983 5.93723 5.99437 6.05769 6.11118 6.31555 6.33890 6.50967 6.55259 6.77795 6.90091 7.00209 7.20369 7.52567 7.59678 7.64810 8.22229 8.71474 8.93010 9.52826 11.00258 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045665 B = 0.016341 C = 0.014274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.014962 B = 1713.097940 C = 1961.090255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.067 3.933 3 Si 0.947 3.053 4 H -0.300 1.300 5 H -0.334 1.334 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.223 3.777 10 O -0.559 6.559 11 C -0.140 4.140 12 C 0.031 3.969 13 N -0.500 5.500 14 C 0.034 3.966 15 C -0.153 4.153 16 C -0.147 4.147 17 C 0.074 3.926 18 H 0.099 0.901 19 H 0.264 0.736 20 H 0.368 0.632 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.380 -1.670 0.304 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.784 3.216 4 H -0.228 1.228 5 H -0.266 1.266 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.183 3.817 10 O -0.367 6.367 11 C -0.179 4.179 12 C -0.097 4.097 13 N -0.223 5.223 14 C -0.095 4.095 15 C -0.192 4.192 16 C -0.185 4.185 17 C -0.034 4.034 18 H 0.117 0.883 19 H 0.073 0.927 20 H 0.217 0.783 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.203 -1.953 1.137 11.428 hybrid contribution 0.547 1.385 -0.870 1.725 sum 11.749 -0.568 0.267 11.766 Atomic orbital electron populations 1.69983 1.06910 1.27569 1.48454 1.25184 0.94948 1.00552 0.93036 0.85708 0.78229 0.79778 0.77913 1.22800 1.26613 1.18392 1.21266 0.89113 0.95257 1.52648 0.90295 1.20259 0.93726 0.80558 0.87198 1.86073 1.76000 1.46119 1.28544 1.23461 0.95868 1.00599 0.97950 1.23174 0.97490 0.99488 0.89520 1.66179 1.15172 1.29965 1.10937 1.22835 0.92516 0.94628 0.99479 1.22708 0.98863 0.97118 1.00514 1.22857 0.93730 0.99208 1.02746 1.23565 0.94669 0.85802 0.99399 0.88291 0.92666 0.78324 0.92222 0.90583 0.94364 0.91363 0.91927 0.90879 0.92589 0.92043 0.89089 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.95 23.51 24.62 -169.99 -4.18 19.33 16 4 H -0.30 -7.25 7.03 56.52 0.40 -6.85 16 5 H -0.33 -8.68 7.11 56.52 0.40 -8.28 16 6 H -0.26 -6.15 4.24 56.52 0.24 -5.91 16 7 C -0.55 -14.93 8.67 -34.44 -0.30 -15.23 16 8 H 0.08 2.39 7.97 -52.49 -0.42 1.97 16 9 C 0.22 5.03 0.84 -89.36 -0.08 4.96 16 10 O -0.56 -12.02 5.78 -35.23 -0.20 -12.22 16 11 C -0.14 -2.76 6.41 -23.89 -0.15 -2.92 16 12 C 0.03 0.55 6.21 -2.01 -0.01 0.54 16 13 N -0.50 -9.57 5.84 -220.87 -1.29 -10.86 16 14 C 0.03 0.55 6.58 -3.25 -0.02 0.53 16 15 C -0.15 -2.43 6.59 -25.89 -0.17 -2.60 16 16 C -0.15 -2.86 4.64 -25.79 -0.12 -2.98 16 17 C 0.07 1.59 3.45 -65.76 -0.23 1.37 16 18 H 0.10 2.35 7.78 -51.93 -0.40 1.95 16 19 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 20 H 0.37 7.17 8.51 45.56 0.39 7.55 16 21 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 22 H 0.08 1.58 7.84 -51.93 -0.41 1.17 16 23 H 0.04 0.65 7.70 -51.93 -0.40 0.25 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.88 7.87 -51.93 -0.41 0.47 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.87 5.78 -51.93 -0.30 1.57 16 30 H 0.06 1.22 7.27 -51.93 -0.38 0.84 16 LS Contribution 227.09 15.07 3.42 3.42 Total: -1.00 -30.05 227.09 -6.40 -36.45 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.74 Total: 4.83 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.18 Total: -14.54 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.52 Total: -37.26 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.20 Total: -12.22 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.18 Total: 19.33 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.05 -6.40 -36.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123427649.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.903 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds