Wall clock time and date at job start Mon Mar 30 2020 02:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99902 * 2 1 4 4 H 1.48500 * 109.46974 * 265.61320 * 3 2 1 5 5 H 1.48495 * 109.47251 * 25.61473 * 3 2 1 6 6 H 1.48503 * 109.46778 * 145.61402 * 3 2 1 7 7 C 1.37877 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99784 * 352.50947 * 7 2 1 9 9 C 1.50701 * 120.00188 * 172.50742 * 7 2 1 10 10 O 1.42900 * 110.32386 * 333.11788 * 9 7 2 11 11 C 1.56328 * 111.42895 * 210.68511 * 9 7 2 12 12 C 1.55000 * 103.20712 * 220.04497 * 11 9 7 13 13 N 1.48267 * 103.02401 * 37.46757 * 12 11 9 14 14 C 1.47239 * 110.66244 * 204.29567 * 13 12 11 15 15 C 1.53754 * 106.55147 * 85.03916 * 14 13 12 16 16 C 1.53871 * 105.65440 * 18.14209 * 15 14 13 17 17 C 1.48433 * 105.72073 * 319.69744 * 13 12 11 18 18 H 1.09002 * 111.60672 * 149.57849 * 17 13 12 19 19 H 0.97006 * 120.00205 * 359.97438 * 1 2 3 20 20 H 0.96702 * 114.00358 * 296.26735 * 10 9 7 21 21 H 1.08994 * 110.75897 * 101.51317 * 11 9 7 22 22 H 1.09001 * 110.43374 * 338.41574 * 11 9 7 23 23 H 1.08999 * 110.70520 * 279.08470 * 12 11 9 24 24 H 1.09001 * 110.70010 * 155.85504 * 12 11 9 25 25 H 1.08995 * 110.04255 * 325.76334 * 14 13 12 26 26 H 1.09002 * 110.03914 * 204.31072 * 14 13 12 27 27 H 1.09001 * 110.21554 * 259.09189 * 15 14 13 28 28 H 1.09007 * 110.21275 * 137.18504 * 15 14 13 29 29 H 1.09004 * 110.16202 * 240.47876 * 16 15 14 30 30 H 1.08998 * 110.23231 * 118.73086 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5893 1.9929 -1.3960 5 1 1.4033 2.6777 0.6053 6 1 3.4972 1.4687 0.7907 7 6 2.0045 -1.1940 -0.0005 8 1 1.4714 -2.1254 0.1210 9 6 3.5019 -1.1995 -0.1707 10 8 3.9222 -0.0479 -0.9049 11 6 3.9901 -2.4985 -0.8905 12 6 5.2883 -2.8609 -0.1250 13 7 4.9581 -2.5106 1.2773 14 6 6.1830 -2.2330 2.0457 15 6 6.5313 -0.7563 1.7962 16 6 5.2422 -0.1108 1.2584 17 6 4.1961 -1.2388 1.2055 18 1 3.4760 -1.1558 2.0196 19 1 -0.4851 0.8401 0.0004 20 1 3.5878 -0.0158 -1.8117 21 1 4.2041 -2.3010 -1.9408 22 1 3.2488 -3.2912 -0.7893 23 1 6.1267 -2.2642 -0.4841 24 1 5.5046 -3.9254 -0.2157 25 1 6.9948 -2.8721 1.6984 26 1 6.0037 -2.4002 3.1078 27 1 7.3288 -0.6771 1.0574 28 1 6.8317 -0.2775 2.7283 29 1 5.4119 0.2915 0.2596 30 1 4.9083 0.6802 1.9298 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123427649.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:47 Heat of formation + Delta-G solvation = -63.477107 kcal Electronic energy + Delta-G solvation = -13601.987966 eV Core-core repulsion = 11396.052902 eV Total energy + Delta-G solvation = -2205.935064 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.23639 -37.53519 -34.42690 -33.86129 -31.27626 -28.97293 -28.24286 -24.97338 -21.95746 -21.72667 -20.60925 -19.25521 -17.32265 -16.92327 -16.81329 -16.13663 -15.35505 -14.77859 -14.51972 -14.32663 -13.93620 -13.63416 -13.06369 -12.69350 -12.50758 -12.27721 -12.17410 -11.99224 -11.88576 -11.61652 -11.13217 -11.08214 -10.55899 -10.16020 -9.40105 -8.31533 -6.42548 1.48378 1.56718 1.78795 2.47967 3.01076 3.15159 3.55329 3.79683 4.05677 4.16898 4.22557 4.32536 4.43698 4.59503 4.66124 4.73767 4.98516 5.01460 5.05188 5.07872 5.27239 5.33472 5.39708 5.50162 5.69684 6.00861 6.11089 6.22443 6.62408 6.95711 7.33697 8.81923 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045665 B = 0.016341 C = 0.014274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.014962 B = 1713.097940 C = 1961.090255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 1.011 2.989 4 H -0.282 1.282 5 H -0.351 1.351 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.033 0.967 9 C 0.219 3.781 10 O -0.553 6.553 11 C -0.138 4.138 12 C 0.040 3.960 13 N -0.518 5.518 14 C 0.033 3.967 15 C -0.143 4.143 16 C -0.146 4.146 17 C 0.072 3.928 18 H 0.063 0.937 19 H 0.264 0.736 20 H 0.377 0.623 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.668 -1.495 0.003 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.845 3.155 4 H -0.210 1.210 5 H -0.286 1.286 6 H -0.167 1.167 7 C -0.582 4.582 8 H 0.051 0.949 9 C 0.179 3.821 10 O -0.363 6.363 11 C -0.177 4.177 12 C -0.087 4.087 13 N -0.241 5.241 14 C -0.095 4.095 15 C -0.182 4.182 16 C -0.184 4.184 17 C -0.037 4.037 18 H 0.081 0.919 19 H 0.072 0.928 20 H 0.228 0.772 21 H 0.100 0.900 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.522 -1.804 0.821 14.656 hybrid contribution -0.535 1.216 -0.765 1.533 sum 13.987 -0.588 0.055 13.999 Atomic orbital electron populations 1.70121 1.08789 1.28303 1.51125 1.26020 0.95450 1.04109 0.92905 0.84667 0.76971 0.75063 0.78793 1.20960 1.28573 1.16747 1.21546 0.92133 0.93277 1.51281 0.94907 1.20120 0.90717 0.82474 0.88832 1.86034 1.75427 1.45593 1.29243 1.23374 0.96725 0.98160 0.99398 1.23192 0.96325 1.01173 0.88046 1.66112 1.17054 1.28648 1.12323 1.22952 0.91786 0.95301 0.99486 1.22651 0.97199 0.96547 1.01799 1.22780 0.94984 0.98252 1.02427 1.23224 0.95059 0.88359 0.97024 0.91925 0.92754 0.77244 0.90019 0.92632 0.92655 0.89056 0.89146 0.90356 0.90708 0.90203 0.89647 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 1.01 48.81 24.62 68.60 1.69 50.50 16 4 H -0.28 -12.74 7.03 99.48 0.70 -12.04 16 5 H -0.35 -17.97 7.11 99.48 0.71 -17.27 16 6 H -0.24 -10.98 4.24 99.48 0.42 -10.56 16 7 C -0.54 -30.74 8.67 25.60 0.22 -30.51 16 8 H 0.03 2.10 7.97 -2.91 -0.02 2.08 16 9 C 0.22 9.72 0.84 -9.98 -0.01 9.71 16 10 O -0.55 -22.51 5.78 -148.98 -0.86 -23.37 16 11 C -0.14 -5.21 6.41 32.44 0.21 -5.00 16 12 C 0.04 1.27 6.21 86.72 0.54 1.81 16 13 N -0.52 -18.54 5.84 -852.69 -4.98 -23.52 16 14 C 0.03 0.92 6.58 86.49 0.57 1.49 16 15 C -0.14 -3.90 6.59 31.14 0.21 -3.70 16 16 C -0.15 -5.27 4.64 31.20 0.14 -5.12 16 17 C 0.07 3.03 3.45 45.34 0.16 3.19 16 18 H 0.06 3.04 7.78 -2.39 -0.02 3.02 16 19 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 20 H 0.38 13.73 8.51 -74.06 -0.63 13.10 16 21 H 0.08 2.68 8.06 -2.39 -0.02 2.66 16 22 H 0.05 2.30 7.84 -2.39 -0.02 2.28 16 23 H 0.06 1.59 7.70 -2.39 -0.02 1.57 16 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.09 2.04 7.87 -2.39 -0.02 2.02 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.09 3.20 5.78 -2.39 -0.01 3.19 16 30 H 0.05 1.91 7.27 -2.39 -0.02 1.89 16 Total: -1.00 -66.37 227.09 -1.16 -67.52 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.20 Total: 15.16 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 2.50 Total: -26.90 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -4.68 Total: -82.91 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.86 Total: -23.37 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.69 Total: 50.50 kcal Total: -66.37 -1.16 -67.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123427649.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.046 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds