Wall clock time and date at job start Mon Mar 30 2020 02:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48504 * 109.47206 * 264.56838 * 3 2 1 5 5 H 1.48500 * 109.47109 * 24.56646 * 3 2 1 6 6 H 1.48494 * 109.47379 * 144.56746 * 3 2 1 7 7 C 1.37875 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00311 * 0.03213 * 7 2 1 9 9 C 1.50698 * 120.00156 * 180.02562 * 7 2 1 10 10 O 1.42894 * 110.25335 * 57.12209 * 9 7 2 11 11 C 1.54572 * 110.28573 * 179.15200 * 9 7 2 12 12 C 1.54998 * 102.95364 * 140.34002 * 11 9 7 13 13 N 1.48262 * 103.02259 * 322.33888 * 12 11 9 14 14 C 1.47251 * 110.66202 * 155.70688 * 13 12 11 15 15 C 1.53760 * 106.54891 * 274.96531 * 14 13 12 16 16 C 1.53873 * 105.65457 * 341.85829 * 15 14 13 17 17 C 1.48435 * 105.71936 * 40.30771 * 13 12 11 18 18 H 1.09001 * 111.60299 * 211.16071 * 17 13 12 19 19 H 0.97001 * 120.00014 * 359.97438 * 1 2 3 20 20 H 0.96701 * 113.99884 * 60.57495 * 10 9 7 21 21 H 1.09001 * 110.71448 * 258.70622 * 11 9 7 22 22 H 1.09003 * 110.71259 * 21.79523 * 11 9 7 23 23 H 1.09002 * 110.70880 * 80.72893 * 12 11 9 24 24 H 1.09009 * 110.70126 * 203.78233 * 12 11 9 25 25 H 1.08999 * 110.04009 * 34.23982 * 14 13 12 26 26 H 1.08998 * 110.03922 * 155.64431 * 14 13 12 27 27 H 1.08998 * 110.20979 * 100.90680 * 15 14 13 28 28 H 1.09004 * 110.20626 * 222.73284 * 15 14 13 29 29 H 1.08995 * 110.16427 * 119.52197 * 16 15 14 30 30 H 1.09000 * 110.16255 * 241.23491 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6114 1.9802 -1.3938 5 1 1.3939 2.6831 0.5821 6 1 3.4846 1.4761 0.8116 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0015 9 6 3.5115 -1.1940 0.0000 10 8 4.0058 -0.4670 1.1266 11 6 4.0475 -2.6437 0.0207 12 6 5.2590 -2.5800 -0.9439 13 7 4.7909 -1.6599 -2.0080 14 6 5.9336 -1.0240 -2.6848 15 6 6.3152 0.2031 -1.8406 16 6 5.0915 0.4941 -0.9543 17 6 4.0486 -0.5812 -1.3090 18 1 3.2421 -0.1843 -1.9256 19 1 -0.4850 0.8401 0.0004 20 1 3.7344 -0.8319 1.9800 21 1 4.3680 -2.9220 1.0247 22 1 3.2933 -3.3388 -0.3483 23 1 6.1335 -2.1710 -0.4378 24 1 5.4784 -3.5665 -1.3526 25 1 6.7721 -1.7187 -2.7344 26 1 5.6468 -0.7128 -3.6893 27 1 7.1838 -0.0211 -1.2215 28 1 6.5242 1.0550 -2.4876 29 1 5.3640 0.4204 0.0985 30 1 4.6978 1.4870 -1.1715 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123427839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:50 Heat of formation + Delta-G solvation = -29.400650 kcal Electronic energy + Delta-G solvation = -13670.868169 eV Core-core repulsion = 11466.410771 eV Total energy + Delta-G solvation = -2204.457398 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.73145 -35.57523 -32.48205 -32.21053 -29.64792 -27.55769 -26.39194 -23.15912 -20.51448 -20.19692 -19.05918 -17.10413 -15.70167 -15.25284 -14.79202 -14.46287 -13.68749 -13.21251 -12.97933 -12.59077 -12.16962 -11.71748 -11.48898 -11.16837 -10.89675 -10.69052 -10.66446 -10.37632 -9.95105 -9.90146 -9.64629 -8.85797 -8.61007 -8.18615 -7.96699 -6.10259 -4.19819 3.37951 3.48649 3.70749 4.52077 4.62063 5.09466 5.15572 5.22181 5.48474 5.58919 5.69722 5.78179 5.92455 5.99164 6.04779 6.13618 6.30713 6.33461 6.50567 6.55731 6.73556 6.91866 7.02919 7.22059 7.55579 7.60028 7.67265 8.30843 8.85103 8.99878 9.53786 10.99954 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041495 B = 0.018109 C = 0.015309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.613031 B = 1545.786384 C = 1828.513533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.082 3.918 3 Si 0.867 3.133 4 H -0.284 1.284 5 H -0.305 1.305 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.214 3.786 10 O -0.572 6.572 11 C -0.135 4.135 12 C 0.032 3.968 13 N -0.497 5.497 14 C 0.034 3.966 15 C -0.151 4.151 16 C -0.157 4.157 17 C 0.072 3.928 18 H 0.099 0.901 19 H 0.264 0.736 20 H 0.360 0.640 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.258 -0.876 -1.197 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.122 4.122 3 Si 0.695 3.305 4 H -0.211 1.211 5 H -0.233 1.233 6 H -0.135 1.135 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.175 3.825 10 O -0.379 6.379 11 C -0.173 4.173 12 C -0.096 4.096 13 N -0.220 5.220 14 C -0.096 4.096 15 C -0.190 4.190 16 C -0.196 4.196 17 C -0.036 4.036 18 H 0.117 0.883 19 H 0.074 0.926 20 H 0.208 0.792 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.036 -0.745 -2.085 11.255 hybrid contribution 0.484 1.035 0.810 1.400 sum 11.520 0.290 -1.275 11.594 Atomic orbital electron populations 1.69949 1.06714 1.27361 1.48978 1.25005 0.94585 0.99785 0.92795 0.87352 0.82122 0.81961 0.79076 1.21115 1.23339 1.13512 1.21368 0.88664 0.94757 1.53336 0.90664 1.19786 0.93283 0.86049 0.83428 1.86519 1.77419 1.57486 1.16490 1.23090 0.96508 1.00050 0.97672 1.23187 0.97118 0.96588 0.92743 1.66155 1.17759 1.14218 1.23836 1.22855 0.93384 0.94606 0.98712 1.22678 0.98843 0.98831 0.98663 1.22974 0.95025 0.99529 1.02037 1.23484 0.95406 0.89815 0.94932 0.88283 0.92631 0.79231 0.92234 0.90589 0.94319 0.91307 0.91768 0.90842 0.92383 0.91990 0.88337 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.08 2.36 5.36 -17.82 -0.10 2.27 16 3 Si 0.87 21.79 22.48 -169.99 -3.82 17.97 16 4 H -0.28 -7.12 6.78 56.52 0.38 -6.73 16 5 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.21 -5.05 4.71 56.52 0.27 -4.79 16 7 C -0.54 -15.06 8.69 -34.44 -0.30 -15.36 16 8 H 0.08 2.27 7.77 -52.49 -0.41 1.87 16 9 C 0.21 4.93 0.79 -90.32 -0.07 4.86 16 10 O -0.57 -12.38 7.21 -35.23 -0.25 -12.64 16 11 C -0.13 -2.69 6.33 -24.85 -0.16 -2.85 16 12 C 0.03 0.57 6.20 -2.02 -0.01 0.56 16 13 N -0.50 -9.85 5.84 -220.85 -1.29 -11.14 16 14 C 0.03 0.55 6.59 -3.24 -0.02 0.53 16 15 C -0.15 -2.46 6.59 -25.88 -0.17 -2.63 16 16 C -0.16 -3.16 4.53 -25.79 -0.12 -3.28 16 17 C 0.07 1.61 2.60 -65.75 -0.17 1.44 16 18 H 0.10 2.50 6.55 -51.93 -0.34 2.16 16 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 20 H 0.36 6.85 9.07 45.56 0.41 7.26 16 21 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 22 H 0.08 1.60 7.66 -51.93 -0.40 1.20 16 23 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 24 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.06 0.91 7.87 -51.93 -0.41 0.50 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 2.06 5.67 -51.93 -0.29 1.76 16 30 H 0.06 1.18 6.12 -51.93 -0.32 0.86 16 LS Contribution 223.13 15.07 3.36 3.36 Total: -1.00 -30.41 223.13 -5.90 -36.31 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -3.55 Total: 7.20 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.12 Total: -14.47 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.52 Total: -37.74 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.25 Total: -12.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -3.82 Total: 17.97 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.41 -5.90 -36.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123427839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.910 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds